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...tataagatattcaaaaaatcattggggtcagttgaccccaaaataagggctagctccgcccctgataccagccatgtgaaccaaacctttgctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGCGGCTCGTTCAGAGGGCCAACATGACCAGGAGAATGCTAGATGGCGAGG
species | Zea mays |
transcript | GRMZM2G004572_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGEST: gi|93281943|gb|EB674207.1|EB674207
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGEST: gi|211297738|gb|FL108113.1|FL108113
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGEST: gi|76014323|gb|DT941493.1|DT941493
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGEST: gi|113641288|gb|DW804432.1|DW804432
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CGCCAAATACCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGEST: gi|18180795|gb|BM382005.1|BM382005
genomic: CGCCAAAT-CCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGEST: gi|93281944|gb|EB674208.1|EB674208
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGEST: gi|74241624|gb|DT649538.1|DT649538
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTTTGAGGTGGTGCAAGCGCTGGTGEST: gi|211231140|gb|FL457453.1|FL457453
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGEST: gi|76018776|gb|DT945946.1|DT945946
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
EST: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAG CCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
genomic: CCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactc ... gctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTG
agggctagctccgcccctgataccagccatgtgaaccaaacctttgctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGCGGCTCGTTCAGAGGGCCAACATGACCAGGAGAATGCTAGATGGCGAGG
ccctgat putative branch site (score: 191)
cctttgct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataagatattcaaaaaatcattggggtcagttgaccccaaaataagggctagctccgcccctgataccagccatgtgaaccaaacctttgctggtgcagCCTGAGCCAGAGTTCAGACCTCCAATGTCTGAGGTGGTGCAAGCGCTGGTGCGGCTCGTTCAGAGGGCCAACATGACCAGGAGAATGCTAGATGGCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccaaa