Sequence
atgc intronic sequence ATGC exonic sequencegttgtatctgtgtacatgatgttcaccatcaatttgcagtgacattattattgatctttgggagtagtgtcatgcacaggcctggttattgtttttgatgtcttcctttccctcctttgcagATTGAAATGCTTACACCAAAAGATTATATTGGTTCAATAATGGAGCTGACTCAAGACAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003157_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 3'ss of exon 15
---gttgtatctgtgtacatgatgttcaccatcaatttgcagtgacattattattgatctttgggagtagtgtcatgcacaggcctggttattgtttttgatgtcttcctttccctcctttgcagATTGAAATGCTTACACCAAAAGATTATATTGGTTCAATAATGGAGCTGACTCAAGACAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAGCA
||| ||||| |||| | | |||||| || ||| |||| ||| ||| | | | || | | |||| ||| || | | |||||| ||| | ||| | | | ||||||| ||||||||||||||||| |||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| |
gttgtttcttctgtatacaggct-ttcaccgtccatt-acagt--catcttta--agattgggagtgttgaattctgcatgtatctgattctcttctttgatctctgcattttttttttatttagATTGACATGCTTACACCAAAAGAGTATATTGGCCCAATAATGGAACTGGGTCAAGAGAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAATA
upper sequence: GRMZM2G003157_T01 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 15
-----------------gttgtatctgt-gtacatgatgttcacca-tcaatttgcagtga--cattattattgatctttgggagtagtgtcatgcacag-gcctggttattgtttttgat-gtcttcctttccctcctttgcagATTGAAATGCTTACACCAAAAGATTATATTGGTTCAATAATGGAGCTGACTCAAGACAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAGCA
||| | | | | || || |||||| | | | | || | | | || || | | || ||| | | | || |||||| ||| | || | | | | | |||||||| |||||||||||||| || || |||||| || | ||||| ||| | ||||| |||||||| | ||||| |||||||| || || | |||| |
gttatttcttgcactttgttctgtttattgttcaccttgttcaatagttgaagcggtttgggctaaaaattttaattcacaagttctttctcttgctctgtgtgtgtgtattgtctttatttgtaattaatgtagttgtgtacagATTGAGATGCTTACACCAAAGGACTACATTGGTCCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATA
upper sequence: GRMZM2G003157_T01 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 15
-----------------gttgtatctgt-gtacatgatgttcacca--tcaatttgcagtgacattat-tattgatctttgggagtagtgtcatgcacaggcctggttattgtttttgat-gtcttcctttccctcctttgcagATTGAAATGCTTACACCAAAAGATTATATTGGTTCAATAATGGAGCTGACTCAAGACAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAGCA
||| | | | | || || |||||| | | || | | | | | || || | | || | | | || |||| ||| | | | | | | | |||||||| |||||||||||||| || || ||||||||| | ||||| ||| | ||||| |||||||| | |||| |||||||| || || | |||| |
gttatttcttgcactttgttctgtttattgttcaccttgttcaagagttgaagcagttagggctaaacattttaattcacatgttctctctctctctctctctgtgtatttgtctttatttggaattaatgtagttgtgtacagATTGAGATGCTTACACCAAAGGACTACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAGAGAAATGAAATTTATTGCTGAAAATA
upper sequence: GRMZM2G003157_T01 (Zea mays), 3'ss of exon 15
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 3'ss of exon 15
gttgtatctgtgtacatgatgttcaccatcaatttgcagtgacattattattgatctttgggagtagtgtcatgcacaggcctggttattgtttttgatgtcttcctttccctcctttgcagATTGAAATGCTTACACCAAAAGATTATATTGGTTCAATAATGGAGCTGACTCAAGACAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAGCA
| ||| | || |||| |||| | | | | || ||| ||| | || | || | | | ||||||||| |||| ||||||||||| ||||||||| | | |||||||| ||||||| || ||||| || ||||| |||||||| | || | || | ||
------------------------gttgcct-tttctactggagatattgctgataagttcacacaccacatttcgtaga-------attacatttccttactgcaaaaccattttatacagATTGAACTGCTCACACCAAAAGACTATATTGGTGCGCTTATGGAGCTCGCTCAAGAGAGGAGAGGGGAGTTCAAAGAAATGAAATATATAGCTGAGAACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93282528|gb|EB674792.1|EB674792EST: TGCTTCCGGAGCCTGGGAAGCGGAGGTCTATAGAAGAACCATATGTGAAG ATTGAAATGCTTACACCAAAAGATT
genomic: TGCTTCCGGAGCCTGGGAAGCGGAGGTCTATAGAAGAACCATATGTGAAGgttgtatctg ... tcctttgcagATTGAAATGCTTACACCAAAAGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcatgcacaggcctggttattgtttttgatgtcttcctttccctcctttgcagATTGAAATGCTTACACCAAAAGATTATATTGGTTCAATAATGGAGCTGACTCAAGACAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAGCA
ttttgat putative branch site (score: 4)
ttgtttttgatgtctt CT-rich tract
ttattgtttttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtatctgtgtacatgatgttcaccatcaatttgcagtgacattattattgatctttgggagtagtgtcatgcacaggcctggttattgtttttgatgtcttcctttccctcctttgcagATTGAAATGCTTACACCAAAAGATTATATTGGTTCAATAATGGAGCTGACTCAAGACAGAAGAGGTGAATTCAAGGAAATGAACTTCATCACAGAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA