1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ttgttgtataagttcattcctaaaagaactgtttgtttgatttgctcttaatgtttcaaacaacagccaattatatataacaggcttaatttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAATGCATTAGAAAATGTTTACCAGTGGGCTTGCGG
species | Zea mays |
transcript | GRMZM2G000039_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAG CAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAATEST: gi|32809860|gb|CD962094.1|CD962094
genomic: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAGgtttgggttc ... ttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAAT
EST: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAG CAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAATEST: gi|32942030|gb|CF046849.1|CF046849
genomic: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAGgtttgggttc ... ttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAAT
EST: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAG CAAAATTCTGATTGGATTGAGTGGCATGCCAGTEST: gi|76288179|gb|DV027747.1|DV027747
genomic: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAGgtttgggttc ... ttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGT
EST: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAG CAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAATEST: gi|32791847|gb|CD944083.1|CD944083
genomic: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAGgtttgggttc ... ttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAAT
EST: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAG CAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAAT
genomic: GGCTCCTTCAGCTGGTCAACACAAACATCATGGTTCAATCACATTTGCAGgtttgggttc ... ttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAAT
tcttaatgtttcaaacaacagccaattatatataacaggcttaatttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAATGCATTAGAAAATGTTTACCAGTGGGCTTGCGG
aattatatataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgtataagttcattcctaaaagaactgtttgtttgatttgctcttaatgtttcaaacaacagccaattatatataacaggcttaatttgattgcagCAAAATTCTGATTGGATTGAGTGGCATGCCAGTACCCTGACGAAGCGTAATGCATTAGAAAATGTTTACCAGTGGGCTTGCGG
-tgttgta
- - - - - - - cattcct
- - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacagc