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gttctttatctttctttcacagatgtcataatctttccttttcctgaagagattcgaggcttatacaatttttttcaacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGACGAACTTTAAAAACTTTAGAATATTCCAGCGTGAACATAAAGAAGATGTC
species | Zea mays |
transcript | AC213600.3_FGT002 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAG GAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGACEST: gi|67012552|gb|CO441301.1|CO441301
genomic: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAGgttctttatc ... aacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGAC
EST: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAG GAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGACEST: gi|211410948|gb|FL407147.1|FL407147
genomic: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAGgttctttatc ... aacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGAC
EST: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAG GAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGACEST: gi|166604170|gb|EG162012.1|EG162012
genomic: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAGgttctttatc ... aacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGAC
EST: GTTTGCGTAGAGGACAAGCTGAAG GAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAEST: gi|60340979|gb|DN207952.1|DN207952
genomic: GTTTGCGTAGAGGAGAAGCTGAAGgttctttatc ... aacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAA
EST: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAG GAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGACEST: gi|211337107|gb|FL422018.1|FL422018
genomic: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAGgttctttatc ... aacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGAC
EST: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAG GAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGAC
genomic: ATGTGGCTGTATTGTCGACCCCTGCAGTTTGCGTAGAGGAGAAGCTGAAGgttctttatc ... aacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGAC
tctttccttttcctgaagagattcgaggcttatacaatttttttcaacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGACGAACTTTAAAAACTTTAGAATATTCCAGCGTGAACATAAAGAAGATGTC
tttttttca CT-rich tract
ttatacaatttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttatctttctttcacagatgtcataatctttccttttcctgaagagattcgaggcttatacaatttttttcaacttgacagGAGCTGCAAAACAAACTGGACGCCATGTCTTTGAAGCAGCCCGGGCATGACGAACTTTAAAAACTTTAGAATATTCCAGCGTGAACATAAAGAAGATGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG