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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgttacttctttctatgccatctatgcttgctttgatgacatgaacaaaattacaaaataactgctatgttgtatccctgtggatgtttactgtgtttccttttttttcccgtgaggacttgaccagctctaaggctctaaattcaaaaacatgaccttttttttccatttgacatctttaattttacagTGTGACTCGCAATTATTTTGAAAATCTCGTCCGGGCTCTGGAAACTGGATTAAATGATGTAGGCCCTTCCACTAGCCATGGCACATGCAGCAAAAGCGCA

Basic information

species Zea mays
transcript GRMZM5G876621_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G876621_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os04g41470.1 (Oryza sativa), 3'ss of exon 14
gtacatgttacttctttctatgccatctatgcttgctttgatgacatgaacaaaattacaaaataactgctatgttgtatccctgtggatgtttactgtgtttccttttttttcccgtgaggacttgaccagctctaaggctctaaattcaaaaacatgaccttttttttccatttgacatctttaattttacagTGTGACTCGCAATTATTTTGAAAATCTCGTCCGGGCTCTGGAAACTGGATTAAATGATGTAGGCCCTTCCACTAGCCATGGCACATGCAGCAAAAGCGCA
     |  |||   |   | ||   |  ||| || || |  | |  |   |  |             ||  | ||| | |     ||  |        || |  ||  |  ||   || |  |  ||| ||  | |||   ||    ||       |  |  | ||  |   |  |    |||||| ||| |||||||||||||||||||||| || || || ||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
----gtactacagatcattctgtttttcatgtttcctatccttat-tactcggatgcttgtgtcctttggaaggttttctttgattgttttgacgacatgatcactcctaatt---gtaaaaagatgatca--tttaaatttc---gtttgtttgtactatatcttcatctgaagttctctcttta-tttgacagTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTAAATGATGTAGGTCCTTCCACTAGCCATGGTACATGCAGCAAGAGCGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155958|gb|DY400747.1|DY400747
EST:     CCCTCGAAAGACTTCAATGATTTCCGTACAAAGTTGGCTGGATTAACTAG                         TGTGACTCGCAATTATTTTGAAAATCTCGTCCGGGCTCTGGAAACTGGATT
genomic: CCCTCGAAAGACTTCAATGATTTCCGTACAAAGTTGGCTGGATTAACTAGgtacatgtta ... aattttacagTGTGACTCGCAATTATTTTGAAAATCTCGTCCGGGCTCTGGAAACTGGATT
EST: gi|45567731|gb|CK985717.1|CK985717
EST:     CCCTCGAAAGACTTCAATGATTTCCGTACAAAGTTGGCTGGATTAACTAG                         TGTGACTCGCAATTATTTTGAAAATCTCGTCCGGGCTCTGGAAACTGGATT
genomic: CCCTCGAAAGACTTCAATGATTTCCGTACAAAGTTGGCTGGATTAACTAGgtacatgtta ... aattttacagTGTGACTCGCAATTATTTTGAAAATCTCGTCCGGGCTCTGGAAACTGGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctaaattcaaaaacatgaccttttttttccatttgacatctttaattttacagTGTGACTCGCAATTATTTTGAAAATCTCGTCCGGGCTCTGGAAACTGGATTAAATGATGTAGGCCCTTCCACTAGCCATGGCACATGCAGCAAAAGCGCA
                                     acatctttaatttta  TA-rich tract