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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatacttctgacagttttacatactggattaagaactaacctgcttcatgaccttcgtaccttaccatcattgtgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAG

Basic information

species Zea mays
transcript GRMZM5G864414_T02
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32837059|gb|CD976737.1|CD976737
EST:     CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG                         CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: gi|13198636|gb|BG354438.1|BG354438
EST:     CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG                         CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: gi|13198689|gb|BG354491.1|BG354491
EST:     CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG                         CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: gi|111433841|gb|EE298127.1|EE298127
EST:     ACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTAGNNTTCGG                         CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGC
genomic: ACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCT-TCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGC
EST: gi|71448844|gb|DR829894.1|DR829894
EST:     GGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG                         CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
genomic: GGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: gi|32838225|gb|CD977903.1|CD977903
EST:     CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG                         CCATGCTTCTATGTCCCACCTTCACTTCGCAAAAAATCTACTGGATATGCA
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: gi|71417221|gb|DR803973.1|DR803973
EST:     CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG                         CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA