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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagccttgtgcatctgagacgttcgagctcagcattctcttgtggtttcttgcatgatgctcttcacgcagggaaatattcgttcgttctcttttcgtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTTGGAGGGCACACTGGCTTCACGGCCAGCTGGATGAGAAGCTCAAGTAGG

Basic information

species Zea mays
transcript GRMZM5G846548_T02
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76018925|gb|DT946095.1|DT946095
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|74241555|gb|DT649469.1|DT649469
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|74233513|gb|DT641427.1|DT641427
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|74246072|gb|DT653986.1|DT653986
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTGGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|60397357|gb|DN230173.1|DN230173
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|60357446|gb|DN224419.1|DN224419
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|18649152|gb|BM497971.1|BM497971
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|18648892|gb|BM497711.1|BM497711
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|5668511|gb|AI932026.1|AI932026
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: gi|71419948|gb|DR804950.1|DR804950
EST:     TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATTTCGAAG                         CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgatgctcttcacgcagggaaatattcgttcgttctcttttcgtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTTGGAGGGCACACTGGCTTCACGGCCAGCTGGATGAGAAGCTCAAGTAGG
                               ttcgttctcttttcgt  CT-rich tract
 aaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagccttgtgcatctgagacgttcgagctcagcattctcttgtggtttcttgcatgatgctcttcacgcagggaaatattcgttcgttctcttttcgtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTTGGAGGGCACACTGGCTTCACGGCCAGCTGGATGAGAAGCTCAAGTAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA