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gtaagttaaaaaaatgactgtcttatttgcctttgtacataccatgacattggactataacaatcagagcaatatagtgaaatcccttttcttgattttggttgaaatatgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGCTCTTAGATGGAAGTCGCTGCAATCCCCACAAGTGGGATTTTGACCAGC
species | Zea mays |
transcript | GRMZM5G829738_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|116815752|gb|EC858445.1|EC858445
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|28931133|gb|CB334494.1|CB334494
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|83279263|gb|DV943271.1|DV943271
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTTTGAACTGEST: gi|6012574|gb|AW062011.1|AW062011
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTTTGAACTGEST: gi|60344962|gb|DN211935.1|DN211935
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|60344398|gb|DN211371.1|DN211371
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|116826672|gb|EC870479.1|EC870479
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAAGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|74234144|gb|DT642058.1|DT642058
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|78125642|gb|DV544026.1|DV544026
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGEST: gi|33097976|gb|CF057936.1|CF057936
genomic: AACAAATGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
EST: TGACGATTGGGGGGCAGACTCGTCCTGTTTATTATTATGCGCCT GAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
genomic: TGACGATTGGGGGGCAGACTCGTCCAGTTTATTATTATGCGCCTgtaagttaaa ... tgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTG
cagagcaatatagtgaaatcccttttcttgattttggttgaaatatgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGCTCTTAGATGGAAGTCGCTGCAATCCCCACAAGTGGGATTTTGACCAGC
tcttgat putative branch site (score: 74)
tgtttttc putative PPT
ttgaaatatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaaaaaaatgactgtcttatttgcctttgtacataccatgacattggactataacaatcagagcaatatagtgaaatcccttttcttgattttggttgaaatatgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGCTCTTAGATGGAAGTCGCTGCAATCCCCACAAGTGGGATTTTGACCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG