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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaaattgactttctgcatatattttagtgacataccttgcagcctttgcttctagtggcatattcctaatctcataccctactttggttttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG

Basic information

species Zea mays
transcript GRMZM5G824405_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824405_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g18310.3 (Oryza sativa), 3'ss of exon 13
acaaaattgactttctgcatatattttagtgacat-accttgcagcctt-tgcttctagtggcatattcctaatctcataccctactttggtttt-cgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
  |   |||      || | | || ||| | |||| | |||| || ||| |  || |  |   |   |  ||||||     ||||||||  |||| | | ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||
-tactgttg-tgagatgaacagatatta-taacattaacttgaagtcttgtcattattttccaaagattgtaatctagcctcctacttttttttttcatccagATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|84980594|gb|DW530943.1|DW530943
EST:     CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAG                         ATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
genomic: CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatga ... tttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
EST: gi|211189269|gb|FL030572.1|FL030572
EST:     CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAG                         ATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
genomic: CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatga ... tttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
EST: gi|67010650|gb|CO439399.1|CO439399
EST:     CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAG                         ATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
genomic: CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatga ... tttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgcttctagtggcatattcctaatctcataccctactttggttttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
                    tcctaat  putative branch site (score: 2)
                                            ttttcgt  putative PPT
                atatt  TA-rich tract