1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gggatccctgttcacttgtgttgctattttgtgcctccgtagcatacagccacatgagttgcattcattcagcacgctgaagcatgtcaaaaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCACTACTCCCACCCACCTCTCGTCGAAAGGCTGCAAGCTCTTGAAGATTCAG
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACAT GAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|91875691|gb|EB405648.1|EB405648
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACATgtaaccatct ... aaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACAT GAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|211458173|gb|FL467225.1|FL467225
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACATgtaaccatct ... aaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACAT GAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|33770597|gb|CF272891.1|CF272891
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACATgtaaccatct ... aaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCCGCTCCGAGCGGCCCTTGTTAAACTACAT GAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|211458174|gb|FL467226.1|FL467226
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACATgtaaccatct ... aaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACAT GAGGAGAACTTGTCTGCAATGAACCCCGATCCTTGGTATTCGGCATATCAC
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACATgtaaccatct ... aaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCAC
acagccacatgagttgcattcattcagcacgctgaagcatgtcaaaaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCACTACTCCCACCCACCTCTCGTCGAAAGGCTGCAAGCTCTTGAAGATTCAG
atgtcaaaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggatccctgttcacttgtgttgctattttgtgcctccgtagcatacagccacatgagttgcattcattcagcacgctgaagcatgtcaaaaaatttcagGAGGAGAACTTGTCTGCAATGAACACCGATCCTTGGTATTCGGCATATCACTACTCCCACCCACCTCTCGTCGAAAGGCTGCAAGCTCTTGAAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -atccctg
- - - - - - - - - tgttgct
- - - - - - - - - - - - - - - -tgcctcc
- - - - - - - - - - - - - - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - - - - - - - - -ccacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtca