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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttattatcattacggcctgcttctcttgtgatttgcatagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAG

Basic information

species Zea mays
transcript GRMZM2G472023_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 3'ss of exon 15
gtacttattatcattacggcctgcttctcttgtgatttgca-------tagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAG
|||||| |||| | | | ||         |||  | |  ||       |  |  ||  | |  | |||  ||| || | ||  |||| ||||||| ||||| ||||||||| | ||||||||||||| |||||| ||||||||||| ||||| | |||
gtactt-ttattactcctgctctgcataattgaaactatcagatatgtttcataaacattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG

upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 3'ss of exon 5
gtacttattatcattacggc-ctgcttctcttgtgatttgcataga----------gcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAG
|||||| |||| | | | || |||| |   |    | |  || | |           ||   | |  | |||  ||| || | ||  |||| ||||||| ||||| ||||||||| | ||||||||||||| |||||| ||||||||||| ||||| | |||
gtactt-ttattactcctgctctgcatagttaaaaactatcagatatgtttcatgtacagcattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211497818|gb|FL217202.1|FL217202
EST:     GAAGAGTCTGTCCTTTCACATCTCTCATTAG                         GAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAAC
genomic: GAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttatta ... cctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgatttgcatagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAG
                                           taccttt  CT-rich tract
                              ttcaaaaatt  TA-rich tract