Sequence
atgc intronic sequence ATGC exonic sequencegtacttattatcattacggcctgcttctcttgtgatttgcatagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAGGTTAGCAGAAAATGTCCATATCAGTTGTATAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G472023_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 3'ss of exon 15
gtacttattatcattacggcctgcttctcttgtgatttgca-------tagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAGGTTAGCAGAAAATGTCCATATCAGTTGTATAGT
|||||| |||| | | | || ||| | | || | | || | | | ||| ||| || | || |||| ||||||| ||||| ||||||||| | ||||||||||||| |||||| ||||||||||| ||||| | |||
gtactt-ttattactcctgctctgcataattgaaactatcagatatgtttcataaacattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG---------------------------------
upper sequence: GRMZM2G472023_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 3'ss of exon 5
gtacttattatcattacggc-ctgcttctcttgtgatttgcataga----------gcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAGGTTAGCAGAAAATGTCCATATCAGTTGTATAGT
|||||| |||| | | | || |||| | | | | || | | || | | | ||| ||| || | || |||| ||||||| ||||| ||||||||| | ||||||||||||| |||||| ||||||||||| ||||| | |||
gtactt-ttattactcctgctctgcatagttaaaaactatcagatatgtttcatgtacagcattcttatgtttcaaactttcatatttttgacagGAAACAACAATCCAATTTCTGGAAATACAATGCTTAGCCTTCTCTCCAAACTTGCCTCTCTGAAAAG---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31358867|gb|CD443224.1|CD443224EST: GATGACAGATGCACTCCATGAAGAGTCTGTCCTTTCACATCTCTCATTAG GAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAAC
genomic: GATGACAGATGCACTCCATGAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttatta ... cctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgatttgcatagagcaatgtccaaacgttcaaaaattccgtacctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAACTTGCATCTCTCACAAGGTTAGCAGAAAATGTCCATATCAGTTGTATAGT
taccttt CT-rich tract
ttcaaaaatt TA-rich tract