Sequence
atgc intronic sequence ATGC exonic sequence...tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G457881_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os03g49730.3 (Oryza sativa), 3'ss of exon 11
tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG------------------------------
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---------gtaaggcacttctct---tcttacagcgtgcagtctcacacttac-----ataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGGTATGGAATACTTTTCCCTATTCACCTACT
upper sequence: GRMZM2G457881_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os03g49730.2 (Oryza sativa), 3'ss of exon 12
tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG
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---------gtaaggcacttctct---tcttacagcgtgcagtctcacacttac-----ataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89755657|gb|DY686001.1|DY686001EST: TTGGTGGGCTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAA GAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
genomic: TTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
EST:
gi|211477964|gb|FL457116.1|FL457116EST: TTGGTGGACTGCATTGACATACTGTAGATTGACAATTCCTGTTTATGAAA GAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
genomic: TTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
EST:
gi|149023563|gb|EE154541.2|EE154541EST: TTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAA GAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
genomic: TTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
EST:
gi|71322958|gb|DR798156.1|DR798156EST: TTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAA GAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
genomic: TTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
32 (downstream exon)
Score:
82ATATATCTGGAATTACAAGATTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG
Block sizes:
49 (upstream exon),
44 (downstream exon)
Score:
24ATATATCTGGAATTACAAGATTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
86ATATATCTGGAATTACAAGATTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
68ATATATCTGGAATTACAAGATTGGTGGACTGCGTTGACATACTGTAGATTGACAATTCCTGTTTATGAAAgtaaggctgc ... tatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATG
cactaat putative branch site (score: 68)
tttttatct CT-rich tract
taatgtttttatctat TA-rich tract