1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...taatacaaatgctgccaccttaggcaagatctggcaagggtgtggatgcatctccagtaaccaaactccagtaaccccccttttttttgtctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGGATTTTGAGTTGGGAACAAAACCACCAGGACATTGTGTCTGATCATACCA
species | Zea mays |
transcript | GRMZM2G451716_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAA GAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGGEST: gi|5895966|gb|AW037212.1|AW037212
genomic: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAAgtatgctctc ... ctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGG
EST: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAA GAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGGEST: gi|5895962|gb|AW037208.1|AW037208
genomic: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAAgtatgctctc ... ctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGG
EST: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAA GAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGGEST: gi|166478607|gb|EG102617.1|EG102617
genomic: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAAgtatgctctc ... ctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGG
EST: GCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAA GAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGGEST: gi|91048864|gb|EB159282.1|EB159282
genomic: GCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAAgtatgctctc ... ctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGG
EST: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAA GAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCC
genomic: GCTGCCGCCCTATACTCTTCCACTCTGATGGTCCGAATGCAGGAGATCAAgtatgctctc ... ctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCC
atgcatctccagtaaccaaactccagtaaccccccttttttttgtctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGGATTTTGAGTTGGGAACAAAACCACCAGGACATTGTGTCTGATCATACCA
cagtaac putative branch site (score: 74)
taaccccccttttttt CT-rich tract
ttttttttgtcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatacaaatgctgccaccttaggcaagatctggcaagggtgtggatgcatctccagtaaccaaactccagtaaccccccttttttttgtctttccacagGAACCATTCCCTGTGGGATCAAATGTCCGTTCCAGGCCTGGAAGGTCCAGGATTTTGAGTTGGGAACAAAACCACCAGGACATTGTGTCTGATCATACCA
-aatacaa
- - - - atgctgc
- - - - - - - - - - - - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccaaa