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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttataatttggtacggagagagtactacaaatgatctgttgatattttctgacttacgatgttcctccctgttctgagattgttttccatttgccacagCAGGATCAGTAAGAGTTAATGGGCCAGTGATGGATTCAAGGTATTCTGCTCACCAACAGATCCCACAAGCATACGGTTACCGCCAAATGCCTGCAAGGTT

Basic information

species Zea mays
transcript GRMZM2G448913_T01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60354488|gb|DN221461.1|DN221461
EST:     AAATGTTACCAGGACATCTCTGACTCCACAAGGGCTGCAAGCACAAGCAG                         CAGGATCAGTAAGAGTTAATGGCCCAGTGATGGATTCAAGGTATTCTGCTC
genomic: AAATGTTACCAGGACATCTCTGACTCCACAAGGGCTGCAAGCACAAGCAGgtattttcgt ... tttgccacagCAGGATCAGTAAGAGTTAATGGGCCAGTGATGGATTCAAGGTATTCTGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctgacttacgatgttcctccctgttctgagattgttttccatttgccacagCAGGATCAGTAAGAGTTAATGGGCCAGTGATGGATTCAAGGTATTCTGCTCACCAACAGATCCCACAAGCATACGGTTACCGCCAAATGCCTGCAAGGTT
      gacttac  putative branch site (score: 2)
                                      ttttccattt  putative PPT
                                  attgtttt  TA-rich tract