1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgtgcagtgtgctatgcttctcagcttttgaccttttgtcatctacattgtattttgttgcgcgatcttttcccagcgcctgattagcgtctgacctcgtcttaatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCTACTGAGCTCCGATCAAGACTGGGAGCCAACTGAGCCTACAAGAAACTT
species | Zea mays |
transcript | GRMZM2G432128_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|213178508|gb|FM194011.1|FM194011
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|13198143|gb|BG354174.1|BG354174
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|211320314|gb|FL454033.1|FL454033
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|76286555|gb|DV026123.1|DV026123
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTTTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|148937600|gb|EC881790.2|EC881790
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|6194438|gb|AW146542.1|AW146542
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: ATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|60338834|gb|DN205807.1|DN205807
genomic: ATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|37377043|gb|CF625092.1|CF625092
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|60352624|gb|DN219597.1|DN219597
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|50338699|gb|CO533825.1|CO533825
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|116823985|gb|EC867562.1|EC867562
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|56382236|gb|CV984905.1|CV984905
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACGCCGAGGAGTTCATCGACGCAGTCGCEST: gi|67010786|gb|CO439535.1|CO439535
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|211106971|gb|FL115258.1|FL115258
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|32912487|gb|CF017299.1|CF017299
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|28983617|gb|BQ538722.2|BQ538722
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|116821966|gb|EC865325.1|EC865325
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|40303174|gb|CK347561.1|CK347561
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|33092418|gb|CF052412.1|CF052412
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|6696062|gb|AW289170.1|AW289170
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|37377787|gb|CF625533.1|CF625533
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|213172317|gb|FM188421.1|FM188421
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CNNNNCGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|21891601|gb|BQ744814.1|BQ744814
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACCCCGAGGAGTTCATCGACGCAGTCGCEST: gi|33091394|gb|CF051388.1|CF051388
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|5895722|gb|AW036968.1|AW036968
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCCCGAGAAGCCATTACCTGAACNCCGAGGAGTTCATCGACGCAGTCGCEST: gi|32849367|gb|CD989048.1|CD989048
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|33098319|gb|CF058279.1|CF058279
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|161586535|gb|EY956172.1|EY956172
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: CGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGEST: gi|60358113|gb|DN225086.1|DN225086
genomic: CGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAG
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|67025371|gb|CO454120.1|CO454120
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|148957373|gb|EC903423.2|EC903423
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTTTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|74237579|gb|DT645493.1|DT645493
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|60346852|gb|DN213825.1|DN213825
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|21706316|gb|BQ635352.1|BQ635352
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|60347229|gb|DN214202.1|DN214202
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|1298626|gb|W21690.1|W21690
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAG--NNEST: gi|67019645|gb|CO448394.1|CO448394
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACNACCGAG-AGTTCATCGACGCAGTCGEST: gi|8401314|gb|BE056948.1|BE056948
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAAC-ACCGAGGAGTTCATCGACGCAGTCG
EST: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCEST: gi|113839300|gb|DW963255.1|DW963255
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: TTCTTGTCCATGGATCTTCCAG CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
ttgcgcgatcttttcccagcgcctgattagcgtctgacctcgtcttaatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCTACTGAGCTCCGATCAAGACTGGGAGCCAACTGAGCCTACAAGAAACTT
tcttaat putative branch site (score: 826)
cctcgtctt CT-rich tract
atctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcagtgtgctatgcttctcagcttttgaccttttgtcatctacattgtattttgttgcgcgatcttttcccagcgcctgattagcgtctgacctcgtcttaatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCTACTGAGCTCCGATCAAGACTGGGAGCCAACTGAGCCTACAAGAAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA