1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttacaagcattttattcacttctgaatcacttatgtaattacacaatatccagtcatatgtacatgctctgatacggcttctgttgtccaaaatcaacagCTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATGAGATGCCTGATATAAAGGATGAGACCCTGCCTGACGAAGAAGGCTTGTC
species | Zea mays |
transcript | GRMZM2G414496_T08 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAAACGTATTGATCTGATAAATTTCTCTGCATGCCAATTTGCTAACCCAG CTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATGEST: gi|33097000|gb|CF056960.1|CF056960
genomic: CAAACGTATTGATCTGATAAATTTCTCTGCATGCCAATTTGCTAACCCAGgtaaatagct ... aaatcaacagCTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATG
EST: CAAACGTATTGATCTGATAAATTTCTCTGCATGCCAATTTGCTAACCCAG CTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATGEST: gi|14245465|gb|BG874047.1|BG874047
genomic: CAAACGTATTGATCTGATAAATTTCTCTGCATGCCAATTTGCTAACCCAGgtaaatagct ... aaatcaacagCTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATG
EST: CATGCCAATTTGCTAACCCAG CTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATG
genomic: CATGCCAATTTGCTAACCCAGgtaaatagct ... aaatcaacagCTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATG
atatccagtcatatgtacatgctctgatacggcttctgttgtccaaaatcaacagCTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATGAGATGCCTGATATAAAGGATGAGACCCTGCCTGACGAAGAAGGCTTGTC
ctctgat putative branch site (score: 4)
aaaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaagcattttattcacttctgaatcacttatgtaattacacaatatccagtcatatgtacatgctctgatacggcttctgttgtccaaaatcaacagCTTTGCAAAGACACTATGGGATCTTGGAGGCCTTAGCTTTAGGCGAAGATGAGATGCCTGATATAAAGGATGAGACCCTGCCTGACGAAGAAGGCTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- acaagca
- - - - - - - - - - -ctgaatc
- - - - - - - - - - - - - - - - - - - -tacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatac