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gtttgtcctttcctactattttccaaacgctgtagctttaattgtatgtaccgggctgggaaaaaaaaagctgatctgatatttgcttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGATGAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGAT
species | Zea mays |
transcript | GRMZM2G399073_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAG TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAEST: gi|67024101|gb|CO452850.1|CO452850
genomic: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctt ... cttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGA
EST: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAG TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGATEST: gi|211354990|gb|FL245115.1|FL245115
genomic: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctt ... cttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAG TACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAT
genomic: GAAGACGCAACTAACAGGAACCGCCTTGCGAAGCTTCTTAGATTTGAAAGgtttgtcctt ... cttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGAT
attgtatgtaccgggctgggaaaaaaaaagctgatctgatatttgcttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGATGAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGAT
atctgat putative branch site (score: 4)
cttgcctc putative PPT
aaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcctttcctactattttccaaacgctgtagctttaattgtatgtaccgggctgggaaaaaaaaagctgatctgatatttgcttgcctcagTACCAAGTCGGATGGCAAACTTGCCTCCCTTGACGAGTACATTTCAAGGATGAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG