1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tctgcccgcattgctcttttattttttttctaatgcatacctcttcatagaatgtatcatcaactctaaaccaaatctggctgggtgtaacatttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCATCACTGTCGTACTGAAGAACGCGATAATTGCTGATGGATTGGTCATAT
species | Zea mays |
transcript | GRMZM2G391936_T04 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|31363279|gb|CD447636.1|CD447636
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTTTACATTCGATCTGGCEST: gi|16377759|gb|BI992107.1|BI992107
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|13236975|gb|BG354989.1|BG354989
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|27753904|gb|BM378096.1|BM378096
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|12967897|gb|BG264844.1|BG264844
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|89763297|gb|DY690558.1|DY690558
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|13126504|gb|BG317074.1|BG317074
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|38688212|gb|CK145243.1|CK145243
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACCAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|91874077|gb|EB404034.1|EB404034
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TTGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCEST: gi|16378153|gb|BI992295.1|BI992295
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA GGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
genomic: TAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAAgtaagttgat ... catttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGC
catagaatgtatcatcaactctaaaccaaatctggctgggtgtaacatttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCATCACTGTCGTACTGAAGAACGCGATAATTGCTGATGGATTGGTCATAT
gtgtaac putative branch site (score: 3)
taacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcccgcattgctcttttattttttttctaatgcatacctcttcatagaatgtatcatcaactctaaaccaaatctggctgggtgtaacatttcacagGGTGTAGATGAAGCTGATAGAACTTCCGAAGGCTTCTACATTCGATCTGGCATCACTGTCGTACTGAAGAACGCGATAATTGCTGATGGATTGGTCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -gcccgca
- - - - - -tgctctt
- - - - - - - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgg