Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatagctattgctagtaaatattaaattccttgtagtgctaccaccaaatatgaattaaattcatgatatgtagcgttacttagtaaacaatgattctggttctctcttgcaaatcgttatgtagccatgtcattatattatggcatcacattcttacctccttattactggttcaacagGTGAATCAGAAGATGATCCTAACACTTACTGCTAGCATTATGTATTGGAGCCTACAGAAACAGCCCCAGTCACAGTCTGAATTGACAGAACAATCAGAAC

Basic information

species Zea mays
transcript GRMZM2G382341_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 3'ss of exon 14
gtaaaatagctattgctagtaaatattaaattccttgtagtgctaccaccaaatatgaattaaattcatgatatgtagcgttacttagtaaacaatgattctggttctctcttgcaaatcgttatgtagccatgtcattatattatggcatcacattcttacctccttattactggttcaacagGTGAATCAGAAGATGATCCTAACACTTACTGCTAGCATTATGTATTGGAGCCTACAGAAACAGCCCCAGTCACAGTCTGAATTGACAGAACAATCAGAAC
                                                                       | | || | ||| || ||   |  |||| ||     ||||||  |  | |  |  |      || ||||| |  || |     | || |||     | || ||| ||||   ||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| || || |||||||| ||||||  | ||||||||||||| |
----------------------------------------------------------------------ctgtcta-cattattt-gttgtctgtgatcct---cttctcttttatcttgaaaaatgatg--gttattatctgttgac----taatcgtactcttatgtttctgtttca---gGTAAATCAGAAGATGATCCTAACGCTTACGGCTAGCATCATGTATTGGAGTCTACAGAAGCAACCACAGTCACAATCTGAAACGTCAGAACAATCAGAGC

upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 14
lower sequence: AT4G26700.2 (Arabidopsis thaliana), 3'ss of exon 14
gtaaaatagctattgctagtaaatattaaattccttgtagtgctaccaccaaatatgaattaaattcatgatatgtagcgttacttagtaaacaatgattctggttctctcttgcaaatcgttatgtagccatgtc-attatattatggcatcacattcttacctccttattactggttcaacagGTGAATCAGAAGATGATCCTAACACTTACTGCTAGCATTATGTATTGGAGCCTACAGAAACAGCCCCAGTCACAGTCTGAATTGACAGAACAATCAGAAC-
                                                                                                       ||     ||   | |   | ||||| |    ||    |||  |     ||| ||          ||  || || |   ||||||||||||||||||||||||||   | || || || || ||||| ||||| || |||| |||  | | |  | |||    |||    |   | ||||| | 
-------------------------------------------------------------------------------------------------------gtaagaactgagagactataatgtatcatcatccgaaatagcaattgctcagatgagatgtgttttggta-tgttgtgacagGTGAATCAGAAGATGATCCTAATTTTAACGGCAAGTATAATGTACTGGAGTCTTCAGAGACATTCACGGG-AGAGTTCAGATTCGTCGTCAACTCAGAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgtcattatattatggcatcacattcttacctccttattactggttcaacagGTGAATCAGAAGATGATCCTAACACTTACTGCTAGCATTATGTATTGGAGCCTACAGAAACAGCCCCAGTCACAGTCTGAATTGACAGAACAATCAGAAC
                          ttcttac  putative branch site (score: 2)
     tcattatattat  TA-rich tract