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gtatgatgcctggatttccttatttttgtgtagcttatgtgcccttttgacccgcttgattaaacttggtgatatatttcgtgcagGGTGTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGGTAGATGATGAATTCTCTGTAGAGTTCAGATGACTACTTTATCCCAC
species | Zea mays |
transcript | GRMZM2G381933_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGNTTACATAG GGGGTCATCGGATATCAAGAGCTGGTCCTTTGGTTGEST: gi|211076372|gb|FL154532.1|FL154532
genomic: TGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAGgtatgatgcc ... tttcgtgcagGGTGTCATCGGATATCAAGAGCTGGTCCTTTGGTTG
EST: TGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG GGTGTCATCGGATATCAAGAGCTGGTEST: gi|78087486|gb|DV515879.1|DV515879
genomic: TGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAGgtatgatgcc ... tttcgtgcagGGTGTCATCGGATATCAAGAGCTGGT
EST: TGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG GGTGTCATCGGATATCAAGAGCTGGTCCTTTTGGT-GTGAATCTTACT
genomic: TGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAGgtatgatgcc ... tttcgtgcagGGTGTCATCGGATATCAAGAGCTGGTCCTTT-GGTTGTGAATCTTACT
agcttatgtgcccttttgacccgcttgattaaacttggtgatatatttcgtgcagGGTGTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGGTAGATGATGAATTCTCTGTAGAGTTCAGATGACTACTTTATCCCAC
tgatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgcctggatttccttatttttgtgtagcttatgtgcccttttgacccgcttgattaaacttggtgatatatttcgtgcagGGTGTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGGTAGATGATGAATTCTCTGTAGAGTTCAGATGACTACTTTATCCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG