1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tctgatgtctgttagtggtctgctttacaggtcaacatatgtgctgtttgtaatggagttttcctgatatacaactgtgccaacctattttgcatgacagGTAATTGCTTGTGAAAATGAACCAGTGAGATGGACGACTCCTCTTGGGCTCCCAGTTGTACAACCATATCGCAAACTTGGGAGGCATCTT
species | Zea mays |
transcript | GRMZM2G381395_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCAAGCTGCCCGTAGTATCATGAACTGGCTTGGTGACTGTGCCAAG GTAATTGCTTGTGAAAATGAACCAGTGAGATGGACGACTCCTCTTGGGCTCEST: gi|31354501|gb|CD438858.1|CD438858
genomic: TGTTTCAAGCTGCCCGTAGTATCATGAACTGGCTTGGTGACTGTGCCAAGgtaccagaca ... tgcatgacagGTAATTGCTTGTGAAAATGAACCAGTGAGATGGACGACTCCTCTTGGGCTC
EST: TGTTTCAAGCTGCCCGTAGTATCATGAACTGGCTTGGTGACTGTGCCAAG GTAATTGCTTGTGAAAATGAACCAGTGAGATGGACGACTCCTCTTGGGCTC
genomic: TGTTTCAAGCTGCCCGTAGTATCATGAACTGGCTTGGTGACTGTGCCAAGgtaccagaca ... tgcatgacagGTAATTGCTTGTGAAAATGAACCAGTGAGATGGACGACTCCTCTTGGGCTC
gtttgtaatggagttttcctgatatacaactgtgccaacctattttgcatgacagGTAATTGCTTGTGAAAATGAACCAGTGAGATGGACGACTCCTCTTGGGCTCCCAGTTGTACAACCATATCGCAAACTTGGGAGGCATCTT
tcctgat putative branch site (score: 67)
cctatttt putative PPT
atatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgatgtctgttagtggtctgctttacaggtcaacatatgtgctgtttgtaatggagttttcctgatatacaactgtgccaacctattttgcatgacagGTAATTGCTTGTGAAAATGAACCAGTGAGATGGACGACTCCTCTTGGGCTCCCAGTTGTACAACCATATCGCAAACTTGGGAGGCATCTT
-ctgatgt
- - - - - - - - - -ctgcttt
- - - - - - - - - - - - - - - - caacata
- - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaacct