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gtgtgatactgcctgccttgttcattgtttttggttagatatcaccgttttcttgataggaactactaatcggacaacttgaaacacagttccctagcttcatctcgtgacctggttttgttttactaatcatagaaatactaatgcctgccctccggtaatgcagGTACCTGATTGCTTCAGAGGGTAGTCAATCATGTCAGTTCTAGCAGTCCTGGCGAAAAGTTATGTCTATGCTTCTCTCCATGCTGTCACACTAAGGATGT
species | Zea mays |
transcript | GRMZM2G376074_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TATATGGCTGCACATACCTGTTGGCATAAGCTAGTTAAGGTCTCTAGAAG GTACCTGATTGCTTCAGAGGGTAGTCAATCATGTCAGTTCTAGCAGTCCTGEST: gi|113783551|gb|DW906090.1|DW906090
genomic: TATATGGCTGCACATACCTGTTGGCATAAGCTAGTTAAGGTCTCTAGAAGgtgtgatact ... ggtaatgcagGTACCTGATTGCTTCAGAGGGTAGTCAATCATGTCAGTTCTAGCAGTCCTG
EST: TATATGGCTGCACATACCTGTTGGCATAAGCTAGTTAAGGTCTCTAGAAG GTACCTGATTGEST: gi|60345273|gb|DN212246.1|DN212246
genomic: TATATGGCTGCACATACCTGTTGGCATAAGCTAGTTAAGGTCTCTAGAAGgtgtgatact ... ggtaatgcagGTACCTGATTG
EST: TATATGGCTGCACATACCTGTTGGCATAAGCTAGTTAAGGTCTCTAGAAG GTACCTGATTGCTTCAGAGGGTAGTCAATCATGTCAGTTCTAGCAGTCCTG
genomic: TATATGGCTGCACATACCTGTTGGCATAAGCTAGTTAAGGTCTCTAGAAGgtgtgatact ... ggtaatgcagGTACCTGATTGCTTCAGAGGGTAGTCAATCATGTCAGTTCTAGCAGTCCTG
ctggttttgttttactaatcatagaaatactaatgcctgccctccggtaatgcagGTACCTGATTGCTTCAGAGGGTAGTCAATCATGTCAGTTCTAGCAGTCCTGGCGAAAAGTTATGTCTATGCTTCTCTCCATGCTGTCACACTAAGGATGT
tactaat putative branch site (score: 103)
ccctccg putative PPT
tttgttttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatactgcctgccttgttcattgtttttggttagatatcaccgttttcttgataggaactactaatcggacaacttgaaacacagttccctagcttcatctcgtgacctggttttgttttactaatcatagaaatactaatgcctgccctccggtaatgcagGTACCTGATTGCTTCAGAGGGTAGTCAATCATGTCAGTTCTAGCAGTCCTGGCGAAAAGTTATGTCTATGCTTCTCTCCATGCTGTCACACTAAGGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG