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gtatttctggatcctcttgatgtctgcagcaagtttatgaacatagatgggagtgacaccctgcttagctttctaatacgattttctctgcctttagGTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGCTAGCTGATCTTCGTCGTGGGATAGCACTTCTGATTTTTGTCGGCCCGTC
species | Zea mays |
transcript | GRMZM2G353213_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG GTCAGGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGCEST: gi|211507478|gb|FL432462.1|FL432462
genomic: TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAGgtatttctgg ... ctgcctttagGTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGC
EST: TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG GTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGCEST: gi|18172822|gb|BM348210.1|BM348210
genomic: TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAGgtatttctgg ... ctgcctttagGTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGC
EST: TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG GTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGCEST: gi|211025065|gb|FL063413.1|FL063413
genomic: TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAGgtatttctgg ... ctgcctttagGTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGC
EST: TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAG GTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGC
genomic: TGCTCGCAGAACCCTCTTAACATTGTAAAATACCAAAATGACAAGGAGgtatttctgg ... ctgcctttagGTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGC
atagatgggagtgacaccctgcttagctttctaatacgattttctctgcctttagGTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGCTAGCTGATCTTCGTCGTGGGATAGCACTTCTGATTTTTGTCGGCCCGTC
ttctaat putative branch site (score: 37)
ttttctctgccttt putative PPT
tttctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctggatcctcttgatgtctgcagcaagtttatgaacatagatgggagtgacaccctgcttagctttctaatacgattttctctgcctttagGTCATGGATGTTTTCATGAAGATATCACAAATCTTCCCCCAAATTAACGGCTAGCTGATCTTCGTCGTGGGATAGCACTTCTGATTTTTGTCGGCCCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT