1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tactggtgaacttgggatcttaagggcctttatctctaacaatttggttgctttaggatggtatattagcaacactgatgtctgatgtatgacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCTCGGATACCCCCAGGCAAACACCTCACCTTCCTACGGCTCCGTTGGTGGT
species | Zea mays |
transcript | GRMZM2G341732_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAAC GCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCTEST: gi|78077119|gb|DV505553.1|DV505553
genomic: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCT
EST: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAAC GCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCTEST: gi|149008599|gb|EE040781.2|EE040781
genomic: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCT
EST: CCGAACAGCATGCCCATGCCTGAACAACAACTTAATAGCATGCTTGCAAC GCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCTEST: gi|32919641|gb|CF024453.1|CF024453
genomic: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCT
EST: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAAC GCAACAAGGTTTGGGTTCCTCCAACATGGGTTTTGATCAGCAAGCTTCTCTEST: gi|67019717|gb|CO448466.1|CO448466
genomic: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCT
EST: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAAC GCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCT
genomic: CCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCT
ggttgctttaggatggtatattagcaacactgatgtctgatgtatgacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCTCGGATACCCCCAGGCAAACACCTCACCTTCCTACGGCTCCGTTGGTGGT
tatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactggtgaacttgggatcttaagggcctttatctctaacaatttggttgctttaggatggtatattagcaacactgatgtctgatgtatgacatcgcagGCAACAAGGTTTGGGTTCCTTCAACATGGGTTTTGATCAGGAAGCTCCTCTCGGATACCCCCAGGCAAACACCTCACCTTCCTACGGCTCCGTTGGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- ctggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgt