1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tataatgatacgcagctcaactgtgtattcaagaaaaaatattgccatttcagtatggtccgctaatccgcttatctatgaatgtgggaaaatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCCAGAAAGAGCACAAGGTAGTCGCCATGGTTGGTGACGGCATTAATGATG
species | Zea mays |
transcript | GRMZM2G315931_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATAAGAAAAAGAAGTTCATATCTGAACTCEST: gi|78104271|gb|DV522689.1|DV522689
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCEST: gi|211170367|gb|FL103276.1|FL103276
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCEST: gi|32823148|gb|CD962870.1|CD962870
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCGGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAEST: gi|32929848|gb|CF034660.1|CF034660
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTA
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCEST: gi|32929738|gb|CF034550.1|CF034550
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCEST: gi|32929733|gb|CF034545.1|CF034545
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCEST: gi|211170365|gb|FL103274.1|FL103274
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCEST: gi|60397501|gb|DN230317.1|DN230317
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCEST: gi|211170368|gb|FL103277.1|FL103277
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
EST: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAG GTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
genomic: AAAGTGCTGCTATGAATGTGGCTTCAGTTGTCGGTATCCAGGCAGACAAGgtaatatcaa ... aatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTC
catttcagtatggtccgctaatccgcttatctatgaatgtgggaaaatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCCAGAAAGAGCACAAGGTAGTCGCCATGGTTGGTGACGGCATTAATGATG
cgctaat putative branch site (score: 3)
ttatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataatgatacgcagctcaactgtgtattcaagaaaaaatattgccatttcagtatggtccgctaatccgcttatctatgaatgtgggaaaatgtcttagGTTCTTGCTGAAGTTAAACCACATGAGAAAAAGAAGTTCATATCTGAACTCCAGAAAGAGCACAAGGTAGTCGCCATGGTTGGTGACGGCATTAATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA