Sequence
atgc intronic sequence ATGC exonic sequence...cacttctgatgctatatttttgttttggaagatcatttttatgaataataccatcgaacacacatgcttatgctttatgtttttggtttactcctctcagAGGTTAGCAACCAGATGTTGGAACTCTATGAGCAGAACCGTGTTCAACCACCACCATCACAAGGTAATGATACTGAAGGCAGTTCTGTAACTGCTGTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 14
lower sequence: GLYMA20G02860.1 (Glycine max), 3'ss of exon 6
cacttctgatgctat-atttttgttttggaagatcatttttatgaataataccat-cgaacacacatgcttatgctttatgtttttggtttactcctct--cagAGGTTAGCAACCAGATGTTGGAACTCTATGAGCAGAACCGTGTTCAACCACCACCATCACAAGGTAATGATACTGAAGGCAGTTCTGTAACTGCTGTGAA------
|| || | |||||| | | | | | | || || | || | | || ||| || | || ||| | | |||| ||||||||||||| || ||||||||||||||||||||||| | || |||||| |||| || | ||| ||||| ||| ||| | |
cagtt-tattgctatgagtagtttaacaatgggctgtccttttgtgtgtctgtatgcttctgtatatcctt---ctcagttcttgtgggtattttctcttgcagAGGTTAGCAATCAAATGTTGGAACTCTATGAGCAGAA------TAGACTTCCACCAGCACAGGGAAGTGAAGTAGAAGGAAGTGCTGGAGGAACAAGAGCTGCTTC
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 14
lower sequence: GLYMA20G02880.1 (Glycine max), 3'ss of exon 5
cacttctgatgctat-atttttgttttggaagatcatttttatgaataataccat-cgaacacacatgcttatgctttatgtttttggtttactcctct--cagAGGTTAGCAACCAGATGTTGGAACTCTATGAGCAGAACCGTGTTCAACCACCACCATCACAAGGTAATGATACTGAAGGCAGTTCTGTAACTGCTGTGAA------
|| || | |||||| | | | | | | || || | || | | || ||| || | || ||| | | |||| |||||||| |||| || |||||||||||||||||||||| | || |||||| |||| || | ||| ||||| ||| || | |
cagtt-tattgctatgagtagtttaacaatgggctgtccttttgtgtgtctgtatgcttctgtatatcctt---ctcagttcttgtgggtattttctcttgcagAGGTTTGCAATCAAATGTTGGAACTCTATGAGCAGAG------TAGACTTCCACCAGCACAGGGAAGTGAAGTAGAAGGAAGTGCTAGAGGAACAAGAGCTGCTTC
upper sequence: GRMZM2G308570_T02 (Zea mays), 3'ss of exon 14
lower sequence: PP1S86_187V6.1 (Physcomitrella patens), 3'ss of exon 6
cacttctgatgctatatttttgttttggaagatc--atttttatgaataataccatcgaacacacatgcttatgctttatgtttttggtttactcctctcagAGGTTAGCAACCAGATGTTGGAACTCTATGAGCAGAACCGTGTT--CAAC-CACCACCATCACAAGGTAATGATACTGAAGGCAGTTCTGTAACTGCTGTGAA
| | | | | || |||| | | | | | | |||| | || | | | || || || | |||| | ||||| |||||||| |||||||||||||| || |||||||| | | | | || || |||| | ||| || | |||| | | | | |
cttgttttaaccgatgttttccaagtaggatacttgactcttattg-cgttgatatttagatcgggcacagatctcataagtgtc-agtttttggttttcagAAGTTAGCAATCAGATGTTGGAACTTTACGAGCAGAATAGAAATAACGGCGCAACAGGCTCACTGGCTAACGACCCAAGCCCCAGTGAAATGA--ACCGGGG- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taataccatcgaacacacatgcttatgctttatgtttttggtttactcctctcagAGGTTAGCAACCAGATGTTGGAACTCTATGAGCAGAACCGTGTTCAACCACCACCATCACAAGGTAATGATACTGAAGGCAGTTCTGTAACTGCTGTGAA
tttactcctctc CT-rich tract
tttatgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacttctgatgctatatttttgttttggaagatcatttttatgaataataccatcgaacacacatgcttatgctttatgtttttggtttactcctctcagAGGTTAGCAACCAGATGTTGGAACTCTATGAGCAGAACCGTGTTCAACCACCACCATCACAAGGTAATGATACTGAAGGCAGTTCTGTAACTGCTGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG