1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgtatctgaactggttgtcattattttctataaggcccagctactgtttgagcatctaaaaagcttatttacaattaccgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGCGGATGCTACATCGACCAAAGCCAGAGCCTCAATGTCCACATGGAGCAA
species | Zea mays |
transcript | GRMZM2G304362_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACACGGCGGTCGACCGEST: gi|32934636|gb|CF039448.1|CF039448
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAGGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|33093398|gb|CF053392.1|CF053392
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: CGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|28931227|gb|CB334588.1|CB334588
genomic: CGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|13150171|gb|BG320493.1|BG320493
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTTGACCGEST: gi|32907431|gb|CF012244.1|CF012244
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|32934774|gb|CF039586.1|CF039586
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|29577171|gb|CB617283.1|CB617283
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|32933139|gb|CF037951.1|CF037951
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|32945530|gb|CF050349.1|CF050349
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATAGCGGTCGACCGEST: gi|32934883|gb|CF039695.1|CF039695
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|32933143|gb|CF037955.1|CF037955
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|31356810|gb|CD441167.1|CD441167
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|32931555|gb|CF036367.1|CF036367
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|91053675|gb|EB164093.1|EB164093
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|211165342|gb|FL103230.1|FL103230
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCAGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTTGACCGEST: gi|211165339|gb|FL103227.1|FL103227
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCAGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTTGACCGEST: gi|91879055|gb|EB409012.1|EB409012
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: CTGTCCAGAAGATAGCAGAGATCCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|33094392|gb|CF054386.1|CF054386
genomic: CTGTCCAGAAGATAGCAGAAATCCC-GGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|32935070|gb|CF039882.1|CF039882
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|31405947|gb|CD484679.1|CD484679
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|32932471|gb|CF037283.1|CF037283
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGEST: gi|211165344|gb|FL103232.1|FL103232
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCAGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTTGACCGEST: gi|32932118|gb|CF036930.1|CF036930
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
EST: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAA AACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
genomic: TCTGTCCAGAAGATAGCAGAAATCCCGGACGATCTTAAAGCAATCTACAAgtatgtatct ... accgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCG
aaggcccagctactgtttgagcatctaaaaagcttatttacaattaccgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGCGGATGCTACATCGACCAAAGCCAGAGCCTCAATGTCCACATGGAGCAA
atctaaa putative branch site (score: 51)
taaaaagcttatttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatctgaactggttgtcattattttctataaggcccagctactgtttgagcatctaaaaagcttatttacaattaccgcaccagAACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGACATGGCGGTCGACCGCGGATGCTACATCGACCAAAGCCAGAGCCTCAATGTCCACATGGAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA