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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT

Basic information

species Zea mays
transcript GRMZM2G181151_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 14
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagt-tctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
                                       | |||     |      |  |||  |  || | | |  | ||| ||| ||| ||   |||  |||| |||| |   |   |||  ||||||| || || ||||||||||| ||||||||||| ||||| |||||||||||||| || ||| | |||||||| |||||||| || || ||||||||||
---------------------------------------gtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagt---aaatttaatattctatctttatctgc--agCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGAGCATATGATACAAGAAACATCTTTCAGTCACTTGACCTAGCATGGACAT

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G42940.3 (Glycine max), 3'ss of exon 14
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
    || || | | |  |    || |||    |  |     |||  |    | || |   ||    || | |  |  |  |       |||     |||    | |||      ||  |   ||||| ||  | || ||  | || ||||||||||| ||||||||  | || ||||| || ||||| || || || |||||||||||||||||||||||||| |
----gtctctaataactttctatcttaataagtactatattttgtttcttaatgtga---aattgcccttgaagtgatatt------aatg----gaactc--ttttccccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTT

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 14
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT-
                      ||   |   ||| |     |   | | |  | |    ||    |   | || | || |||     | ||     ||   | | |  | ||  |  |    ||||| || || || ||  | || ||||||||||||||||||||  | |||||||||||||| ||||| || ||||||||||||||||||||||||||||| | 
----------------------tctctactacttttc----tcttgggaattcttgtttgagt--gtagtgagattgtccttgaagtggtggtactaattaagtttattctttatgatcaa-cagcTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTT

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G38110.1 (Glycine max), 3'ss of exon 14
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
                     |  |||     ||  ||       | | |  | |    ||  | |   |  ||| || |||     | ||     ||  |||| || |  |  ||  |   ||||| || || || ||  | || ||||||||||||||||||||  | |||||||| ||||| ||||| || ||||||||||||||||||||||||||||| |
--------------------gtctctactacttttctct-----tgggaattcttgtttgagtatggtgt--gtttgtccttgaagtggtggtactaat-taattttattctttttgatcaacagCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCTTACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTT

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 15
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgct--cagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
                     |  ||||   ||  |||    |   |    ||   |           | |    | ||    || |  ||     ||   ||    |  |  | | ||  |  ||||| ||  | || ||  | || ||||||||||||||||||||  | || ||||| || ||||| || || || ||||||||||| |||||||||||||| |
--------------------gtctctaataact--ttctatcttgataagtactatattttgtttcttcaagtgaaatttcccttgaagtggtactaatggaactccccctccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCCTATGACACCCGCAATATATTCCAGTCACTTGATCTTGCATGGACTT

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 15
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgct--cagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
                                        ||  |            |  | ||    |||| |   |||  ||| |    ||  ||  |     || | |||  |  |||   ||||| ||  | |||||| | || ||||| ||||||||||||||| | || ||||| || || || || ||||||||||||||||| || || ||||||||  
----------------------------------------gtctctcttcttttcttcttaccacagtctaaatgctttccgttttattcctcttaacac-----tttttttatctgatgcaaacagCTATATCTTGAGTTCTTGGATAAGTTCGAGAGGAAGTTTGTGGCTCAGGGAGCTTATGATACCCGAAACATCTTCCAGTCACTCGACCTGGCATGGACTC

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 14
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
                 ||  |  ||  |  |||   |    | ||||      | |    ||      |     | |  ||  ||| |     | ||  || |||  |||   ||  |    |||| || |||||||| || || || ||||| |||||||||||||  ||||| |||||||| ||| |||||||||||||||| || ||  | ||||||||| 
----------------gtacctctctctga-cttcaccaatattcgtgttcctatcaagatactgtatatgcaacaataattactcaca-----acaatttattgtgttgtgtgtttgt----agCTGTATTTAGAGTTTCTGGATAAATTTGAAAGGAAGTTTGTGATGCAAGGCGCATACGATACAAGGAACATCTTCCAGTCGCTTGACTTGGCATGGACAC

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 14
----gtctgtttcgagtgaaataaattcctaagggct-tgttcgggttgcgtgcagacgtaaccgaacaa-gccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
     ||| ||||            |   ||    || |||    |||   |     | |   | | |||     |    ||| |     ||| |       |||||   |||  |||   |     |||||||||  | |||||||| ||||| || |||||||| |||||| | ||||| || || || || || ||||||||||||||||||||| | || |||||||
gtatctctctttctctctcctcctttctgtagaaactatgtgtttgttttttcacatctttctctagcaataatttctcatagattaaaatcacaaagtattaacctggggttgggttgtctaaaattcagCTTTATCTGGAGTTCCTAGACAAATTCGAGAGGAAATTTGTGGCTCAAGGGGCTTATGATACCCGCAACATCTTCCAGTCACTAGATTTGGCGTGGACAT

upper sequence: GRMZM2G181151_T04 (Zea mays), 3'ss of exon 5
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 14
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaaccta-atgttctgttacttcttgct-----cagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
                                  || |   |  |    | |  | | |     |   || |  |   ||  | |   | |   | |||  | | ||| |   ||   |  ||     ||||| ||  | || ||||| ||||| || ||||| || |||||| | || ||||| || ||||| || |||||||||||||| || ||||| ||||||||  
----------------------------------gtacatctcactcttataaattatcatttca--tctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGAGCCTATGACACCCGCAACATCTTCCAGTCCCTTGATCTGGCATGGACGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355003|gb|DN221976.1|DN221976
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|16925493|gb|BM078561.1|BM078561
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|4646659|gb|AI491497.2|AI491497
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACCCAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32945219|gb|CF050038.1|CF050038
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211017023|gb|FL053488.1|FL053488
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|8665595|gb|BE186411.1|BE186411
EST:     TCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCCTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: TCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60343435|gb|DN210408.1|DN210408
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211222466|gb|FL437622.1|FL437622
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60352479|gb|DN219452.1|DN219452
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|31664289|gb|CD573014.1|CD573014
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|6973468|gb|AW438162.1|AW438162
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211122809|gb|FL454319.1|FL454319
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|67019767|gb|CO448516.1|CO448516
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|37389349|gb|CF631894.1|CF631894
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTCGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|33101769|gb|CF061729.1|CF061729
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|194716931|gb|FK934090.1|FK934090
EST:     AGGCCTTGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211222467|gb|FL437623.1|FL437623
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|166486768|gb|EG089934.1|EG089934
EST:     CTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: CTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|67015926|gb|CO444675.1|CO444675
EST:     ANGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|33101431|gb|CF061391.1|CF061391
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGCGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|87155501|gb|DY400290.1|DY400290
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|30307203|gb|CD001876.1|CD001876
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|213188201|gb|FM181912.1|FM181912
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60399031|gb|DN231847.1|DN231847
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|8665298|gb|BE186114.1|BE186114
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60395817|gb|DN228687.1|DN228687
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|24767815|gb|CA402951.1|CA402951
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211309921|gb|FL436450.1|FL436450
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|6563648|gb|AW231375.1|AW231375
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|4646712|gb|AI491575.2|AI491575
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACCCAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|13236999|gb|BG355013.1|BG355013
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|6539106|gb|AW225245.1|AW225245
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60396754|gb|DN229618.1|DN229618
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|37401251|gb|CF637988.1|CF637988
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211489603|gb|FL460465.1|FL460465
EST:     CTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: CTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211019798|gb|FL053491.1|FL053491
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60349199|gb|DN216172.1|DN216172
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|33094143|gb|CF054137.1|CF054137
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGTACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211107575|gb|FL066804.1|FL066804
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32933748|gb|CF038560.1|CF038560
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32942169|gb|CF046988.1|CF046988
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32931582|gb|CF036394.1|CF036394
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGGGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211222468|gb|FL437624.1|FL437624
EST:     AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|6501158|gb|AW202531.1|AW202531
EST:     GGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: GGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcg ... tcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT
                           acctaat  putative branch site (score: 3)
                                   ttctgttacttctt  CT-rich tract
       ttcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATACGACACACGGAACATCTTCCAGTCACTAGATCTTGCATGGACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA