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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacagtattccttctactttatttttagtggcaaggttcagttattgtctcctcagcactgtaataagttttcctgttacccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTG

Basic information

species Zea mays
transcript GRMZM2G178822_T03
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361016|gb|CD445373.1|CD445373
EST:     CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG                         GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAATCTTCATCG
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCG
EST: gi|67015254|gb|CO444003.1|CO444003
EST:     CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG                         GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAATCTTCATCGCTTCCT
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
EST: gi|60352824|gb|DN219797.1|DN219797
EST:     CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG                         GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
EST: gi|28188021|gb|CB179631.1|CB179631
EST:     CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG                         GGTTGTACATGTGTTCCGCTTCCTGTCCGTCTGAAAGCTTCATCGCTTCCT
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
EST: gi|211493408|gb|FL041695.1|FL041695
EST:     CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG                         GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcagttattgtctcctcagcactgtaataagttttcctgttacccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTAAAACACCTCCATGTG
                                 ttttcctgttaccc  CT-rich tract
                          taataagtttt  TA-rich tract