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gtaagttcttcagctatagtattatcttagattgtatagcaaccgatcattgcgttacttgataatttaaatttctgcatatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG
species | Zea mays |
transcript | GRMZM2G178822_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCA TCACTATGCTCATGGEST: gi|31361016|gb|CD445373.1|CD445373
genomic: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCAgtaagttctt ... tatctcgcagTCACTATGCTCATGG
EST: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGATCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCEST: gi|67015254|gb|CO444003.1|CO444003
genomic: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCAgtaagttctt ... tatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTC
EST: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGATCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCEST: gi|60352824|gb|DN219797.1|DN219797
genomic: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCAgtaagttctt ... tatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTC
EST: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCEST: gi|28188021|gb|CB179631.1|CB179631
genomic: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCAgtaagttctt ... tatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTC
EST: GTAGCGAGGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCEST: gi|211493408|gb|FL041695.1|FL041695
genomic: GTAGCGAGGCAATTGACCTCATCTCAgtaagttctt ... tatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTC
EST: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCMATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTC
genomic: TGTCTGAGGTGATGACAACAGCTAGTAGCGAGGCAATTGACCTCATCTCAgtaagttctt ... tatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTC
tatagcaaccgatcattgcgttacttgataatttaaatttctgcatatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG
acttgat putative branch site (score: 265)
ttacttgataatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttcagctatagtattatcttagattgtatagcaaccgatcattgcgttacttgataatttaaatttctgcatatctcgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT