Sequence
atgc intronic sequence ATGC exonic sequence...atctagaagtgcactcttttttgggacagagggcgtaaatacatgccattttcctttatttatcctctattgctgaaatctaactacctgcacataccagGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g56670.2 (Oryza sativa), 3'ss of exon 14
atctagaagtgcactcttttttgggacagagggcgtaaataca-tgc-cattttcctttatttatcctctattgctg---aaatctaactacct----gcacataccagGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAA
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---------tctttgcctaaataaccagcaatgcaacaatttactgcatattttcgttgagctattctctattgttggttaaatctaattaattattagcgcattccagGTCAAATATCTCTGGCTTCTTTTTGATTTAGCTGCAGGCCCTGATAATATTGTTGAAAATGGGCCATATAA
upper sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 13
atctagaagtgcactcttttttgggacagagggcgtaaatacatgccattttcctttatttatcctctattgctgaaatctaactacctgcacatacca------gGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAA
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--ctaccattaacatttgtcttgcctttcatattttgtcttt-tccccccctctattatttatt---taaaagaaaaatgctgctactaacctatgctacaattagGTCAAGTATCTGTGGCTTCTGTTTGATTTGGCTGTGGGTCCTGACAATCTTGTGGAAAATGGGCCTTACAA
upper sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 13
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 15
-atctagaagtgcactcttttttgggacagagggcg-taaatacatgccattttcctttatttatcctctattgctgaa-atctaactacctgcacataccagGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAA
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tgtctttcta-gcatttgttttttgattggcttgtgctccttttatttccttatgttatctttttccttt-tcattgattattgaactatccacat-tattagGTCAAGTATTTGTGGCTTCTTTTTGATTTGGCTGCGGGTTCGGACAACCTTGTTGAAAATGGGCCATACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32834027|gb|CD973705.1|CD973705EST: AAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACG GTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATT
genomic: AAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACGgtgagcatct ... cacataccagGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccattttcctttatttatcctctattgctgaaatctaactacctgcacataccagGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAA
atctaac putative branch site (score: 2)
tttatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atctagaagtgcactcttttttgggacagagggcgtaaatacatgccattttcctttatttatcctctattgctgaaatctaactacctgcacataccagGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT