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...attggaatgtatccttgacccaacatacagtttagggatgatgttttcggttttgcttgtaagatttttattgattttctggaaattacctgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGTTTCCTCCTGGTGTGGGTGAACGTTCCAGTGGTGAAATTGGCAACAGCGA
species | Zea mays |
transcript | GRMZM2G173777_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAA CTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGTEST: gi|33093013|gb|CF053007.1|CF053007
genomic: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAAgtaagaatac ... tgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGT
EST: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAA CTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGTEST: gi|71596082|gb|DR906833.1|DR906833
genomic: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAAgtaagaatac ... tgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGT
EST: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAA CTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGTEST: gi|211130865|gb|FL130501.1|FL130501
genomic: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAAgtaagaatac ... tgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGT
EST: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAA CTGGTGACTATCCGTCCCGAAAGGGT-CAAGTGAGATAGGGTCGATGCCCGEST: gi|211130864|gb|FL130500.1|FL130500
genomic: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAAgtaagaatac ... tgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCC-G
EST: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAA CTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGT
genomic: AAATCTGTATGGATCATCTCATGGCACTGATACTGTTGGATTGGATTCAAgtaagaatac ... tgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGT
ttcggttttgcttgtaagatttttattgattttctggaaattacctgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGTTTCCTCCTGGTGTGGGTGAACGTTCCAGTGGTGAAATTGGCAACAGCGA
tattgat putative branch site (score: 47)
ttgtaagatttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggaatgtatccttgacccaacatacagtttagggatgatgttttcggttttgcttgtaagatttttattgattttctggaaattacctgttgtcaagCTGGTGACTATCCGTCCCGAAAGGGTTCAAGTGAGATAGGGTCGATGCCGTTTCCTCCTGGTGTGGGTGAACGTTCCAGTGGTGAAATTGGCAACAGCGA
- - - -tgtatcc
- - - - - - - - - - caacata
- - - - - - - - - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttctg