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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgccatttctttacttcatgatcaaaactatatttgtcaagggtatgcaattcttaaaattcttattattctcatgtgtccatccttctatgattcagTGTAGTGATAAGCTGGGCCTGAGTCTCGAGTTGGGTTCATTTGCAGCTGGAGTAATGATATCAACAACAGACCTTGCGCAACATACTCTTGAACAA

Basic information

species Zea mays
transcript GRMZM2G171031_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171031_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os06g36590.1 (Oryza sativa), 3'ss of exon 14
---tttgccatt-tctttacttcatgatcaaaactatatttgtcaagggtatgcaattcttaaaattcttattattctcatgtgtccatccttctatgattcagTGTAGTGATAAGCTGGGCCTGAGTCTCGAGTTGGGTTCATTTGCAGCTGGAGTAATGATATCAACAACAGACCTTGCGCAACATACTCTTGAACAA
     ||   || | ||||     | | ||   |||| ||  ||     |||     || ||||| |  | || | ||||||||  |  ||||||||||| ||||| ||||||||| ||||| ||||||| ||||||||||| || |||||||||||||||||||||||||| || ||||| ||||| || |||||||||
gaaaatgtagttatgtttatccttttaacagttctat-ttgctctcttctatcggtatcctaaaacttatgtt-tactcatgtg--cggccttctatgatgcagTGCAGTGATAAGTTGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGATATCAACAACTGATCTTGCACAACACACACTTGAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211174109|gb|FL245438.1|FL245438
EST:     ATGAACTATACCAGCTGGCAGCGGTTGCGTTCTGCTTGTTATTTGCTTGG                         TGTAGTGATAAGCTGGGCCTGAGTCTCGAGTTGGGTTCATTTGCAGCTGGA
genomic: ATGAACTATACCAGCTGGCAGCGGTTGCGTTCTGCTTGTTATTTGCTTGGgtgagtttct ... tatgattcagTGTAGTGATAAGCTGGGCCTGAGTCTCGAGTTGGGTTCATTTGCAGCTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcaattcttaaaattcttattattctcatgtgtccatccttctatgattcagTGTAGTGATAAGCTGGGCCTGAGTCTCGAGTTGGGTTCATTTGCAGCTGGAGTAATGATATCAACAACAGACCTTGCGCAACATACTCTTGAACAA
                                   tccatccttct  CT-rich tract
     aattcttaaaattctt  TA-rich tract