1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...taatgatgccccctgctatataaatctgacacagggtgctttgtaaccattgctttcataagttattttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG
species | Zea mays |
transcript | GRMZM2G167999_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACEST: gi|6056606|gb|AW091011.1|AW091011
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACEST: gi|67025265|gb|CO454014.1|CO454014
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACEST: gi|6020795|gb|AW065723.1|AW065723
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACEST: gi|211189104|gb|FL252863.1|FL252863
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACEST: gi|32919061|gb|CF023873.1|CF023873
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCCAAGGAGAATACAAA ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACEST: gi|211234744|gb|FL433588.1|FL433588
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: ACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA ATGGGGGTTTTATTTACACCCTGCGGAAGGCTCGCCTGCACCAAACATAAC
genomic: ACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
accattgctttcataagttattttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG
cttattttctttat CT-rich tract
ttattttttctgatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgatgccccctgctatataaatctgacacagggtgctttgtaaccattgctttcataagttattttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG
- -tgatgcc
- - - - - -cctgcta
- - - - - - - - - - - - -ctgacac
- - - - - - - - - - - - - - - - - ggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctg