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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caactgtcaatcgtagacataaactaatttcaattgatgttccttaaaatggaaatggttttgcttttttgctgaaggtgatggtttattgttattacagGAATTTATGGTCAACTGAGATCATCTCCAAGACCGAGAGGGCTAACAGAAAACATCAGATTTCAGCATCCAATTACTCTTGACTAACGTTCCACTCTTTG

Basic information

species Zea mays
transcript GRMZM2G167886_T01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76909049|gb|DV163197.1|DV163197
EST:     GTGCTGCTGAATCTTATCTTGATTATGGCTTCGGCAACATCCTGGAAGAG                         GAATTTATGGTCAACTGAGATCATCTCCAAGACCGAGAGGGCTAACAGAAA
genomic: GTGCTGCTGAATCTTATCTTGATTATGGCTTCGGCAACATCCTGGAAGAGgttccctctg ... gttattacagGAATTTATGGTCAACTGAGATCATCTCCAAGACCGAGAGGGCTAACAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatggaaatggttttgcttttttgctgaaggtgatggtttattgttattacagGAATTTATGGTCAACTGAGATCATCTCCAAGACCGAGAGGGCTAACAGAAAACATCAGATTTCAGCATCCAATTACTCTTGACTAACGTTCCACTCTTTG
                                       tttattgttattaca  TA-rich tract