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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatataagttttggtcaactggaatgatttctggatgaatccgggacaaacgaacaggcttcatctgatctgatccggacaattttactttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAACCAGCCATTAATGAAGGCAAACTTAAACAGAACGAGCAACCGTTCTGA

Basic information

species Zea mays
transcript GRMZM2G162672_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os05g28200.2 (Oryza sativa), 3'ss of exon 13
-----------------------------ttatataagttttggtcaactggaa--tgatttctggatgaatccgggacaaacgaacaggcttcatctgatctgatccggacaattttac-tttgctga---tagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAACCAGCCATTAATGAAGGCAAACTTAAACAGAACGAGCAACCGTTCTGA---
                             | || |     ||   ||    |||  ||       |  ||| | ||    ||| |||  ||    ||  |||||||| |  |||| |||| |||||  |    |||||||||| ||||| ||||||||  ||||||| |||||||| || || ||||||||||| | ||||| |||     || |     |  |     |||||    
gtgcgcttctgttagcttcttcaattcattcatctcttccttccccattctgaaactgccaagcagtagaaactggagacaaccaac--gcacagtc--atctgatcagtgcaatcttacatttgccaaatgcagGCAAGCGCGCAACCGTTCTTCGTCTTGGGCCTTCTGGTGACCGCCCTTGCAACCAGCCACTGATGAAAGCAG---CAATCGCCCTGGACTGTGATTCTGTGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211036110|gb|FL230102.1|FL230102
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|71759623|gb|DR957560.1|DR957560
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATAT---                         -C-AGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|211433564|gb|FL478685.1|FL478685
EST:     CCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: CCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|211036106|gb|FL230098.1|FL230098
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAN                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|71314948|gb|DR794088.1|DR794088
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|211036107|gb|FL230099.1|FL230099
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|71324982|gb|DR799184.1|DR799184
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACACCCATTTTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|149110076|gb|EE293890.2|EE293890
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|71426127|gb|DR807177.1|DR807177
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|71763867|gb|DR961804.1|DR961804
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|32931186|gb|CF035998.1|CF035998
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCGCAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: gi|148929759|gb|EE285358.2|EE285358
EST:     TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG                         GCAAGCGCACAACCATTTTTTGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaacgaacaggcttcatctgatctgatccggacaattttactttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAACCAGCCATTAATGAAGGCAAACTTAAACAGAACGAGCAACCGTTCTGA
                       atctgat  putative branch site (score: 4)
                                      ttttacttt  putative PPT
                                    aattttacttt  TA-rich tract