1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttatataagttttggtcaactggaatgatttctggatgaatccgggacaaacgaacaggcttcatctgatctgatccggacaattttactttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAACCAGCCATTAATGAAGGCAAACTTAAACAGAACGAGCAACCGTTCTGA
species | Zea mays |
transcript | GRMZM2G162672_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|71759623|gb|DR957560.1|DR957560
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATAT--- -C-AGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|211433564|gb|FL478685.1|FL478685
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: CCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|211036106|gb|FL230098.1|FL230098
genomic: CCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAN GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|71314948|gb|DR794088.1|DR794088
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|211036107|gb|FL230099.1|FL230099
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|71324982|gb|DR799184.1|DR799184
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACACCCATTTTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|149110076|gb|EE293890.2|EE293890
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|71426127|gb|DR807177.1|DR807177
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|71763867|gb|DR961804.1|DR961804
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|32931186|gb|CF035998.1|CF035998
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCGCAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAEST: gi|148929759|gb|EE285358.2|EE285358
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
EST: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG GCAAGCGCACAACCATTTTTTGTACTGGGCCTACTGGTGACAGCACTGGCA
genomic: TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttca ... ttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCA
gacaaacgaacaggcttcatctgatctgatccggacaattttactttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAACCAGCCATTAATGAAGGCAAACTTAAACAGAACGAGCAACCGTTCTGA
atctgat putative branch site (score: 139)
ttttacttt putative PPT
aattttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatataagttttggtcaactggaatgatttctggatgaatccgggacaaacgaacaggcttcatctgatctgatccggacaattttactttgctgatagGCAAGCGCACAACCATTCTTCGTACTGGGCCTACTGGTGACAGCACTGGCAACCAGCCATTAATGAAGGCAAACTTAAACAGAACGAGCAACCGTTCTGA
- - - - -ttttggt
- - - - - - - - - - - - - - - -ctggatg
- - - - - - - - - - - - - - - - - - - - - - - - aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatcc