1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aagtttttgcatctactgaccatcatgttgtcacgtattgttctctgcttctttttttctttttctttctgcccaatactgaaggccgttttgcatccagGACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATCATCGGCGCGACCACGGAAGAACTGGTTATGAAAGCCAGGCAAAGCTAGC
species | Zea mays |
transcript | GRMZM2G161168_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGGTGATGGATGCAGTTCAGAAGCTGGAGAGGCTTGGTGTCATTACAAGA GACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATCEST: gi|71426967|gb|DR808017.1|DR808017
genomic: AGGTGATGGATGCAGTTCAGAAGCTGGAGAGGCTTGGTGTCATTACAAGAgtgagttctc ... ttgcatccagGACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATC
EST: AGGTGATGGATGCAGTTCAGAAGCTGGAGAGGCTTGGTGTCATTACAAGA GACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATCEST: gi|40334664|gb|CK368734.1|CK368734
genomic: AGGTGATGGATGCAGTTCAGAAGCTGGAGAGGCTTGGTGTCATTACAAGAgtgagttctc ... ttgcatccagGACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATC
EST: TGGTGATGGATGCAGTTCAGAAGCTGGAGAGGCTTGGTGTCATTACAAGA GACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATC
genomic: AGGTGATGGATGCAGTTCAGAAGCTGGAGAGGCTTGGTGTCATTACAAGAgtgagttctc ... ttgcatccagGACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATC
tgcttctttttttctttttctttctgcccaatactgaaggccgttttgcatccagGACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATCATCGGCGCGACCACGGAAGAACTGGTTATGAAAGCCAGGCAAAGCTAGC
ccgtttt CT-rich tract
tttttttctttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtttttgcatctactgaccatcatgttgtcacgtattgttctctgcttctttttttctttttctttctgcccaatactgaaggccgttttgcatccagGACTCTATTGGAAGGATTTGCTGTGTCCCTCTAAAGCGTGCCAATGAGATCATCGGCGCGACCACGGAAGAACTGGTTATGAAAGCCAGGCAAAGCTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - ttgcatc
- - - - - - -tactgac
- - - - - - - - - - - - atgttgt