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...attatatttggttacatccggttttcattgtaataggtttttattgacatgccatagcttatacctgaattaataaaaattggtaacttcctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGAAGATTCTAGCTAAAAGTCAAACTGTG
species | Zea mays |
transcript | GRMZM2G147191_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|211530862|gb|FL078323.1|FL078323
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|76282582|gb|DV022150.1|DV022150
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|211530863|gb|FL078324.1|FL078324
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAG-CAAAGAACTACACTGGACTATGTGAGEST: gi|58029381|gb|CX724808.1|CX724808
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|67018859|gb|CO447608.1|CO447608
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|13557631|gb|BG548987.1|BG548987
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|166596288|gb|EG233785.1|EG233785
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: GGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|60357940|gb|DN224913.1|DN224913
genomic: GGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGEST: gi|16380053|gb|BI993288.1|BI993288
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
EST: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAG TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
genomic: ATGCACTTGCAGTCCATGGGCATCTCATTGTAATTGGTATGATCTCCCAGgtaactttgg ... ctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAG
gacatgccatagcttatacctgaattaataaaaattggtaacttcctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGAAGATTCTAGCTAAAAGTCAAACTGTG
tggtaac putative branch site (score: 479)
cttcctattttc CT-rich tract
ttatacctgaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatatttggttacatccggttttcattgtaataggtttttattgacatgccatagcttatacctgaattaataaaaattggtaacttcctattttcagTATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGAAGATTCTAGCTAAAAGTCAAACTGTG
- - - - - - tacatcc
- - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa