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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagagatactatatcttacagctaccaaaccgatcgcccatcgcaagcagcacgcgtctcgctcgggaacgaattaatcctggtcgatcccatggcgcgtttggtcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACCGGGGGGCCACGCGCTCCGCGTCCATCACCGCGGCATGGCCGGACGTGG

Basic information

species Zea mays
transcript GRMZM2G146463_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146463_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os07g26900.1 (Oryza sativa), 3'ss of exon 12
gtacagagatactatatcttacagctaccaaaccgatcgcccatcgcaagcagcacgcgtctcgctcgggaacgaattaatcctggtcgatcccatggcgcgtttggtcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACCGGGGGGCCACGCGCTCCGCGTCCATCACCGCGGCATGGCCGGACGTGG
              | |    ||  ||  | | | |   || |     | || ||    | ||  ||   |   |||          |||||      | | | |  ||   | |||||||||||||||| ||||||   ||| |||| ||||||||||||||| ||||| || |||||| ||  |  |   ||||| ||||| |||| |||| | |
-------------gtgtgcagca-ttattatagctactaccaaaaatcatcaacagat-tttcattccaaactaaatcg--------cgatcttgaatcacatct--tc--ctacagGTATGGGCAGGGCCGCTCTCCCAGCAGAGGACGGCGGTGCTGCTGCTGAACCGCGGCGCCACGGGCAGCCGGCAGATCACGGCGGCGTGGCAGGACATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443279|gb|DR824329.1|DR824329
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|86465787|gb|DY232160.1|DY232160
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|78113278|gb|DV531670.1|DV531670
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|86466262|gb|DY232634.1|DY232634
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|5006127|gb|AI712189.1|AI712189
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|71443417|gb|DR824467.1|DR824467
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|50334851|gb|CO529977.1|CO529977
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|60357458|gb|DN224431.1|DN224431
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|91874598|gb|EB404555.1|EB404555
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGTTGTTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|60338146|gb|DN205119.1|DN205119
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|74238711|gb|DT646625.1|DT646625
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|71318125|gb|DR795824.1|DR795824
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|91054334|gb|EB164752.1|EB164752
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|89763955|gb|DY690933.1|DY690933
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|149055655|gb|EE156360.2|EE156360
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|78080807|gb|DV509219.1|DV509219
EST:     GGGTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|71430639|gb|DR811689.1|DR811689
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|50330298|gb|CO525424.1|CO525424
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|78073768|gb|DV502202.1|DV502202
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|87156914|gb|DY401703.1|DY401703
EST:     GGCTGGGTGTCCA-GGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCT
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCT
EST: gi|87157241|gb|DY402030.1|DY402030
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACNGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|78075208|gb|DV503642.1|DV503642
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATTTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGTTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|211420211|gb|FL465092.1|FL465092
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGTTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|78088430|gb|DV516823.1|DV516823
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|89763171|gb|DY690487.1|DY690487
EST:     GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG                         GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGTTGCTGTTCAAC
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: gi|60353667|gb|DN220640.1|DN220640
EST:     GCAACGATCTCGAG                         GTATGGGCAGGGCAGCTATAGGGACACAGGAAGGCGGTGCAGCTGCTCAAC
genomic: GCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctcgggaacgaattaatcctggtcgatcccatggcgcgtttggtcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACCGGGGGGCCACGCGCTCCGCGTCCATCACCGCGGCATGGCCGGACGTGG
            aattaat  putative branch site (score: 3)
            aattaat  TA-rich tract