1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacgtgaaaagtgaataagcgccgagctcgcttgcctatgcaatggctcaaattcatgcaagcttgtgcttcttggttcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGCCGCACTCGTGCAAGCTCTTCGTCCTCACGCCCGTTCCTAGCTGACGGC
species | Zea mays |
transcript | GRMZM2G146463_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|78080807|gb|DV509219.1|DV509219
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|91050985|gb|EB161403.1|EB161403
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCCCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|211420211|gb|FL465092.1|FL465092
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTCGCCGTGCAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|60396730|gb|DN229595.1|DN229595
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|50330298|gb|CO525424.1|CO525424
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|89759845|gb|DY688531.1|DY688531
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|60394257|gb|DN227127.1|DN227127
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|71430639|gb|DR811689.1|DR811689
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGEST: gi|60353667|gb|DN220640.1|DN220640
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
tgcctatgcaatggctcaaattcatgcaagcttgtgcttcttggttcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGCCGCACTCGTGCAAGCTCTTCGTCCTCACGCCCGTTCCTAGCTGACGGC
ttcatct CT-rich tract
aaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgaaaagtgaataagcgccgagctcgcttgcctatgcaatggctcaaattcatgcaagcttgtgcttcttggttcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGGCCGCACTCGTGCAAGCTCTTCGTCCTCACGCCCGTTCCTAGCTGACGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA