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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatcctaatgttgttaatataaaagtataaaactagtactatgaacagatttaagtggttcttctcttgtttatccacagGTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGAC

Basic information

species Zea mays
transcript GRMZM2G132712_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132712_T03 (Zea mays), 3'ss of exon 15
lower sequence: PP1S8_288V6.1 (Physcomitrella patens), 3'ss of exon 15
---------------------------------------------------------------------------------------------------gtatgtaatcctaatgttgttaatataaaagtataaaactagtactatgaacagatttaagtggttcttct-------cttgtttatccacagGTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGAC
                                                                                                   |||   | | |  ||   | |    ||   | | |   ||         || |  || ||||        |         | |||     |||||    ||||| || |||||||||||||||||||| |||||||| || || || ||
gtaattagactgctattgtatttttctggtgaattttaaaaactttgtgtagaatcaggttagaaatactatattgtttgttttcaaatagccatgtaggtagtcatttcagatcccggtctcttactggca-actccttacgtgggaaagaagttgaagtaacctacgtgacgcgctgtattttctttcagGTTGTTATTGTGGTGGTTGCTGTGCCTGAGGGACTTCCATTGGCCGTCACGCTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443249|gb|DR824299.1|DR824299
EST:     CTGGTGTGAAGCAAGGATTTATGGGGGCAATTAGAATTTTGACTATCGCT                         GTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACA
genomic: CTGGTGTGAAGCAAGGATTTATGGGGGCAATTAGAATTTTGACTATCGCTgtatgtaatc ... ttatccacagGTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACA
EST: gi|31350151|gb|CD434508.1|CD434508
EST:     CTGGTGTGAAGCAAGGATTTATGGGGGCAATTAGAATTTTGACTATCGCT                         GTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACA
genomic: CTGGTGTGAAGCAAGGATTTATGGGGGCAATTAGAATTTTGACTATCGCTgtatgtaatc ... ttatccacagGTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaaactagtactatgaacagatttaagtggttcttctcttgtttatccacagGTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGAC
                                 ttcttctcttgtttat  CT-rich tract
                     agatttaa  TA-rich tract