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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accagaaggcaacagtcatctaatatggttccatgtatttatgttgtctcctaaacagaaaactgttctgacaccatatttcttttcctctttttaccagATTCCCCTCATCATATTGACATCATACCTCAAAAATAAATTCAGTGACACAATG

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 3'ss of exon 14
-------------------------------------------------------accagaaggcaacagtcatctaatatggttccatgtatttatgttgtctccta-aacagaaaactgttctgacaccatat---ttcttttcctctttttaccagATTCCCCTCATCATATTGACATCATACCTCAAAAATAAATTCAGTGACACAATG
                                                       | |    |        | |    |||   |  |||| |     || |    ||  ||| | ||||||||| |  |  | |   || ||| || ||| || |||||| ||||| ||| |||||||| |||||||||||| ||||||||| || ||||||
gtacgtgttaaaaaaattacactgaatagtatgctgtaaaacgtgcactcatgcaatctcttgtttttttcctttctgtataaataaatgtgtgcccattctgcagtatgacatagaactgttctcatgcagtctcctttttttcccccttgtttccagATCCCCCTTATCGTATTGACAGCATACCTCAAAAGTAAATTCAGAGATACAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166524704|gb|EG322014.1|EG322014
EST:     TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG                         ATTCCCCTCATCATATTGACATCATACCTC
genomic: TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatataa ... tttttaccagATTCCCCTCATCATATTGACATCATACCTC
EST: gi|88756047|gb|DY540188.1|DY540188
EST:     TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG                         ATTCCCCTCATCATATTGACATCATACCTCAAAA
genomic: TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatataa ... tttttaccagATTCCCCTCATCATATTGACATCATACCTCAAAA
EST: gi|211193694|gb|FL010949.1|FL010949
EST:     TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG                         ATTCCCCTCATCATATTGACATCATACCTCAAAAATAAATTCAGTGACACA
genomic: TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatataa ... tttttaccagATTCCCCTCATCATATTGACATCATACCTCAAAAATAAATTCAGTGACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctcctaaacagaaaactgttctgacaccatatttcttttcctctttttaccagATTCCCCTCATCATATTGACATCATACCTCAAAAATAAATTCAGTGACACAATG
                    ttctgac  putative branch site (score: 2)
                          caccatatttcttttc  CT-rich tract
                              atatttctttt  TA-rich tract