1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaacagctctgtcttgttgctctaaccgaatatccctgtactgatcctgcaatacacgtcgaatgaacttgatgggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCAGAAGCCCCGGAGAGTGAGAAGAAGGAGAGCTCAGAAACCAAAGAAGCTC
species | Zea mays |
transcript | GRMZM2G128748_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTTACCGCCCTGTTAGGGAGCTCCTGAAGATAGAAAGAGAGAGGGAACTG GAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCAEST: gi|93282698|gb|EB674962.1|EB674962
genomic: CTTACCGCCCTGTTAGGGAGCTCCTGAAGATAGAAAGAGAGAGGGAACTGgtaacagctc ... ggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCA
EST: CCTGAAGATAGAAAGAGAGAGGGAACTG GAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCAEST: gi|67024699|gb|CO453448.1|CO453448
genomic: CCTGAAGATAGAAAGAGAGAGGGAACTGgtaacagctc ... ggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCA
EST: CTTACCGCCCTGTTAGGGAGCTCCTGAAGATAGAAAGAGAGAGGGAACTG GAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCAEST: gi|93282697|gb|EB674961.1|EB674961
genomic: CTTACCGCCCTGTTAGGGAGCTCCTGAAGATAGAAAGAGAGAGGGAACTGgtaacagctc ... ggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCA
EST: AAGATAGAAAGAGAGAGGGAACTG GAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCAEST: gi|74242219|gb|DT650133.1|DT650133
genomic: AAGATAGAAAGAGAGAGGGAACTGgtaacagctc ... ggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCA
EST: CCTGAAGATAGAAAGAGAGAGGGAACTG GAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCAEST: gi|37379457|gb|CF626473.1|CF626473
genomic: CCTGAAGATAGAAAGAGAGAGGGAACTGgtaacagctc ... ggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCA
EST: AGATAGAAAGAGAGAGGGAACTG GAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCA
genomic: AGATAGAAAGAGAGAGGGAACTGgtaacagctc ... ggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagctctgtcttgttgctctaaccgaatatccctgtactgatcctgcaatacacgtcgaatgaacttgatgggtgtctcagGAGCGAAGGGAAAAGGAGTCAAAAGACAAGGCGGCGGCGGCGGAGAATTCAGAAGCCCCGGAGAGTGAGAAGAAGGAGAGCTCAGAAACCAAAGAAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC