1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ggaaaaatgaggcttggtttctttatttatttgtttggtgaaaagtttaacgttcctctagccatcacaaaatcttaaaagaaattgttgaaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
species | Zea mays |
transcript | GRMZM2G128688_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|32936632|gb|CF041451.1|CF041451
genomic: TCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTGgtatgatatt ... aaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|5740370|gb|AI948060.1|AI948060
genomic: TCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTGgtatgatatt ... aaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTNNNNNNNGATTG ATGAGTTTGGAAAAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|149075127|gb|EE163620.2|EE163620
genomic: TCCGAGCCCCTGGAAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTGgtatgatatt ... aaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: AAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|30705078|gb|CD058658.1|CD058658
genomic: AAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTGgtatgatatt ... aaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: AAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
genomic: AAAGGATGAAAATGTCCGTTTGTCTCCACCCCGATTGgtatgatatt ... aaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
tttaacgttcctctagccatcacaaaatcttaaaagaaattgttgaaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
gtttaac putative branch site (score: 3)
aaaatcttaaaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaaaatgaggcttggtttctttatttatttgtttggtgaaaagtttaacgttcctctagccatcacaaaatcttaaaagaaattgttgaaccatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - -tgaggct
- - - - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa