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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctggttctcgcttacttcattgagaccttaaacatggtttttggtgttttgttgcctctctttgtaatgcatgtgaagtaccctctaatctatttgtagGGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTTTATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCA

Basic information

species Zea mays
transcript GRMZM2G128114_T03
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128114_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os02g07760.1 (Oryza sativa), 3'ss of exon 15
tctggttctcgcttacttca-ttgagaccttaaacatggtttttggtgttttgt-tgcctctctttgtaa-tgcatgtgaagtaccctc-taatctatttgtagGGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTTTATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCA
     |  | || | ||||| || |   ||   || | |||| |  | |||||| ||| | |||||| || |||| || |  ||||| | | |||  |||| ||||||||||  ||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
----ttgtttgcctgcttcagttaaagactgggaccttgtttgttttcttttgtctgcttatctttgcaactgcacgtaagatacccccatcatccttttgcagGGAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTCTATGAGCCAACTGTAGTAGGGAACGTCAGCAATGATATGCTTCTTTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|194717149|gb|FK934302.1|FK934302
EST:     GTGGAGAAGTTCATAAATGACGCAACTTCAAAG                         GGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGAATGTCATTT
genomic: GTGGAGAAGTTCATAAATGACGCGACTTCAAAGgtaatctcaa ... ctatttgtagGGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTT
EST: gi|84980453|gb|DW530802.1|DW530802
EST:     GTGGAGAAGTTCATAAATGACGCGACTTCAAAG                         GGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTT
genomic: GTGGAGAAGTTCATAAATGACGCGACTTCAAAGgtaatctcaa ... ctatttgtagGGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTT
EST: gi|32856352|gb|CD996033.1|CD996033
EST:     GTGGAGAAGTTCATAAATGACGCGACTTCAAAG                         GGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTT
genomic: GTGGAGAAGTTCATAAATGACGCGACTTCAAAGgtaatctcaa ... ctatttgtagGGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTT
EST: gi|67026356|gb|CO455105.1|CO455105
EST:     GTGGAGAANGT-CATAAATGACGCGACTTCAAAN                         G-AGCAAATGTCATGCTANGTGGTAGAAGA-ACAGCCTGGGGATGTCATTT
genomic: GTGGAGAA-GTTCATAAATGACGCGACTTCAAAGgtaatctcaa ... ctatttgtagGGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgttgcctctctttgtaatgcatgtgaagtaccctctaatctatttgtagGGAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTTTATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCA
                                      ctctaat  putative branch site (score: 3)
                                            tctattt  CT-rich tract
                                         taatctattt  TA-rich tract