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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggttccacctttttcaatttcaatcatgtgtgtacttcagttaattaacactattcgataatttggtttgtttgtagCTTCCTCCTTTACTGTAGACTGTGGGAGTAGTAGATCTGTATTTGCTTCAGATAATTCCATGTATCAACCTGATGATGCCAATCTTGGTGTTGCATCATA

Basic information

species Zea mays
transcript GRMZM2G126858_T02
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31558038|gb|CD527250.1|CD527250
EST:     TTCAGCGAAACACGTCATGCTTTCTTGGCTCTCCACAAT                         CTTCCTCCTTTACTGTAGACTGTGGGAGTAGTAGATCTGTATTTGCTTCAG
genomic: TTCAGCGAAACACGTCATGCTTTCTTGGCTCTCCACAATgtgaggttcc ... ttgtttgtagCTTCCTCCTTTACTGTAGACTGTGGGAGTAGTAGATCTGTATTTGCTTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgtgtgtacttcagttaattaacactattcgataatttggtttgtttgtagCTTCCTCCTTTACTGTAGACTGTGGGAGTAGTAGATCTGTATTTGCTTCAGATAATTCCATGTATCAACCTGATGATGCCAATCTTGGTGTTGCATCATA
                    aattaac  putative branch site (score: 2)
                                            tttgttt  putative PPT
                  ttaattaacactatt  TA-rich tract