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gtactacttcctccaccttgtataataggatttatgtgaaattccacttttactgtatttcactacatgcatccccagaatcatttcagtcaggtttgtatggcttgaattcaaaaccgagactttcttcattttgcagATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAG
species | Zea mays |
transcript | GRMZM2G126266_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATTTCAAATCACCTGGTGAACCTAAATACTTGGAGGCATTTG ATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAGEST: gi|37381602|gb|CF627697.1|CF627697
genomic: ATTTCAAATCACCTGGTGAACCTAAATACTTGGAGGCATTTGgtactacttc ... cattttgcagATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAG
EST: ATTTCAAATCACCTGGTGAACCTAAATACTTGGTGGCATTTG ATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAGEST: gi|211120830|gb|FL155533.1|FL155533
genomic: ATTTCAAATCACCTGGTGAACCTAAATACTTGGAGGCATTTGgtactacttc ... cattttgcagATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAG
EST: ATTTCAAATCACCTGGTGAACCTAAATACTTGGAGGCATTTG ATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAG
genomic: ATTTCAAATCACCTGGTGAACCTAAATACTTGGAGGCATTTGgtactacttc ... cattttgcagATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAG
ttcagtcaggtttgtatggcttgaattcaaaaccgagactttcttcattttgcagATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAG
ctttcttcattttgc CT-rich tract
aattcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacttcctccaccttgtataataggatttatgtgaaattccacttttactgtatttcactacatgcatccccagaatcatttcagtcaggtttgtatggcttgaattcaaaaccgagactttcttcattttgcagATCTTAGCCCAGAAGAGGCTGAAGATGTTAGCTTTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG