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gtaagttcttcagttatagtattatcttagatggtatatcaattgatcattgcgtaacttgataatttaaatttctgcatgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCCAGCATACCTTTTTTCAG
species | Zea mays |
transcript | GRMZM2G108829_T03 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|32871065|gb|CF010747.1|CF010747
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGC-ATGCAATTGAC-T-ATCTCA TCACTATGC-CATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|32932540|gb|CF037352.1|CF037352
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|71304777|gb|DR788504.1|DR788504
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGEST: gi|32832603|gb|CD972281.1|CD972281
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGG
EST: GGCCGACGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|211496287|gb|FL041699.1|FL041699
genomic: GGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|31350422|gb|CD434779.1|CD434779
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACCACAGCCAGTAGCGATGCAATTGATCTCATCTCA TCACCTATGCTCATGGGATCCTAACAAGEST: gi|32870331|gb|CF010013.1|CF010013
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCAC-TATGCTCATGGGATCCTAGCAAG
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|32869779|gb|CF009461.1|CF009461
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|67011156|gb|CO439905.1|CO439905
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGATCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|5325074|gb|AI783265.1|AI783265
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|5846886|gb|AI999969.1|AI999969
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCEST: gi|5932684|gb|AW057045.1|AW057045
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGATCTCATCTCA TCACTATGCTCATGGGATCCTAGC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGC
tatatcaattgatcattgcgtaacttgataatttaaatttctgcatgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCCAGCATACCTTTTTTCAG
taacttgataatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttcagttatagtattatcttagatggtatatcaattgatcattgcgtaacttgataatttaaatttctgcatgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTCCAGCATACCTTTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT